F Rosa Rubicondior: Biodiversity
Showing posts with label Biodiversity. Show all posts
Showing posts with label Biodiversity. Show all posts

Sunday 22 January 2023

Biodiversity News - In The Chinese Year of the Rabbit, Several Related Species are Endangered

Biodiversity News

In The Chinese Year of the Rabbit, Several Related Species are Endangered
European brown hare, Lepus europaeus

European hare,
In the Year of the Rabbit, spare a thought for all these wonderful endangered bunny species

The once common European brown hare, Lepus europeaeus has declined by 80% in the UK in recent years, and, as the Chinese year of the Rabbit is about to begin, it's not the only threatened species of the order Lagomorpha, to which rabbits, hares and other related species belong.

In the following article, reprinted from The Conversation under a Creative Commons license, Emma Sherratt, Senior Research Fellow in Ecology & Evolutionary Biology, University of Adelaide, Australia, list just a few of the 108 lagomorphs, two-thirds of which were already threatened by climate change. Now the number endangered has risen from 13 to 16.

Her original article has been reformatted for stylistic consistency.

Friday 20 January 2023

Evolution in Crisis - Wild Animals Are Evolving Faster Than Anybody Thought

Creationism in Crisis

Wild Animals Are Evolving Faster Than Anybody Thought
Eurasian blue tit, Cyanistes caeruleus

Great tit, Parus major
Great tit, Parus major, one of the species studied

Wild animals are evolving faster than anybody thought

In a paper published in Science last May, a team of research biologists led by Timothée Bonnet of the Australian National University presented evidence that should create consternation and anguish amongst Creationist frauds intent on convincing their cult members that the Theory of Evolution is somehow in crisis and being increasingly rejected by research biologists in favour of their childish origin myth. It reports the finding that evolution is proceeding even faster than anyone previously thought.

Of course, the definition they used for evolution is the standard scientific one of change in allele frequency over time, not the absurd Creationist notion that it means one species suddenly changing into another, or even organisms changing into humans via a few 'intermediate species'.

One of the studies, on great tits, was carried out just a stones throw from where I live, in Wytham Wood, near Oxford, one of the most intensively studied areas of woodland in the world, belonging as it does to Oxford University. The research and its significance were reported in an article in The Conversation written by lead author, Timothée Bonnet, researcher in evolutionary biology (DECRA fellow), Australian National University. The article is reprinted here under a Creative Commons licence. It is reformatted for stylistic consistency.

Creationism in Crisis - Watching Evolution Down Under

Creationism in Crisis
Watching Evolution Down Under

Could feral animals in Australia become distinct species? It's possible – and we're seeing some early signs

Australian feral domestic cat
Australian feral domestic cats are getting bigger
Evolution is defined as change in allele frequency in a population over time. It is not a single event but a slow process which often needs a long period of time to be observed. Speciation may be the incidental result of this process of change over time but it is not the purpose of it, nor is it required for evolution to be occurring.

It doesn't seem to matter to a Creationist that observable examples of evolution in progress, in other words, examples of observed change in allele frequency in the population over time, can be found throughout nature, because they will simply dismiss it by redefining evolution as the childish notion of a sudden change of one species into another. So, for example, evolutionary changes in Australian feral domestic cats will be dismissed as, "But they're still cats!"

In fact, feral domestic cats are not the only species that can be observed evolving in Australia where a combination of the founder effect, genetic drift and natural selection in the unique Australian environment are causing introduced species to diverge from their ancestral species. In the following article, Bill Bateman, Associate professor, Curtin University, Perth, Western Australia, describes a number of examples of observable evolutionary change.

Creationists who have been fooled into believing that evolution is a theory in crisis and biologists are abandoning it in favour of their childish superstition including magic and a supernatural entity should note the complete lack of any evidence for that idiotic notion. The article describes evolutionary changes and the causes of them which are entirely consistent with the scientific Theory of Evolution. No-where are magic or supernatural entities invoked to explain the observations.

The article is reprinted from The Conversation under a Creative Commons license, reformatted for stylistic consistency.

Tuesday 6 December 2022

Biodiversity News - How Man-Made Climate Change is Damaging German Beech Forests.

Press release: Climate change in the forests of northern Germany - Georg-August-Universität Göttingen
Typical north German beech forest
Typical beech forest in northern Germany: the scientists took samples of wood from dominant trees at 30 locations.

Photo: Banzragch Bat-Enerel
Scientists from Germany have shown the negative effects of man-made climate change on the health of beech trees in German forests. These forests are important wild-life refuges with a rich and complex ecosystem, so any damage to the health of the trees will have a major impact of the biodiversity of Central Europe.

The scientists took samples of wood from major trees in 30 different locations so that comparisons could be made between areas with different average rainfall levels. They then analysed the tree rings to obtain a retrospective measure of tree growth.

The news release from Georg-August-Universität, Göttingen, describes the study and its significant findings:

Thursday 1 December 2022

Creationism in Crisis - How Asia's Mammals Evolved

The evolution of Asia’s mammals was dictated by ancient climate change and rising mountains | Field Museum
Lead author Anderson Feijó holding a plateau pika in Tibet.
Photograph: Danping Mu.
Carrying traps in the Hengduan Mountains.
Photograph:Anderson Feijó.
No doubt to the consternation of any Creationist fraud trying to sell the idea that the Theory of Evolution (TOE) is about to be overthrown and replaced by their favourite Bronze Age fairy tale, researchers from Chicago's Field Museum of Natural History and the Chinese Academy of Science, used their knowledge of evolution to hypothesise that the main evolutionary changes in Asian mammals was directly related to major geoclimatic changes. To test their hypothesis, they mapped the known evolutionary changes in Asian mammals onto the known geoclimatic changes across the continent, and found there was a very good fit.

This will come as no surprise to anyone who understands how environmental change drives evolutionary change because environmental change inevitably involves a change in the environmental selectors operating on the organisms subject to it.

The Field Museum news release explains the research and its significance:

Wednesday 16 November 2022

Worldwide Plant Diversity - Interactive Map

International research team led by Göttingen University use advanced machine learning to model biodiversity - Georg-August-Universität Göttingen
Global distribution of plant species richness across the globe as predicted using the distribution 300,000 plant species across 830 regional floras worldwide.
An international research team has produced an online interactive map of plant diversity.

Wednesday 9 November 2022

Creationism in Crisis - How Melanesia's Frogs Evolved

Gliding treefrogs, mini-males and burrowing frogs in trees: why Melanesia is the world's tropical island frog hotspot
Pinocchio frog, Litoria pinocchio
After spending several days writing about unintelligent and malevolent design, and preparing a video summarising the arguments against the intelligent design hoax (and not missing a chance to promote my book on the subject), it makes a change to be able to write about some of my favourite creatures, frogs. The frogs of Melanesia in fact, and especially why there are so many species, sometimes in a very small area.

Although 'writing' is a slight exaggeration since most of this blog is unashamedly reprinted from The Conversation. The Conversation is a free online magazine written by experts in their field and dealing with a wide range of topics. It is well worth subscribing to and supporting with a donation, if you value the truth and appreciate good writing.

This article was written by Paul Oliver, a postdoctoral Researcher in Biodiversity and Evolution, Griffith University, Brisbane, Australia, and Deborah Bower, a lecturer in Ecosystem Rehabilitation, University of New England, Sydney, Australia. It is reprinted here under a Creative Commons license, reformatted for stylistic consistency. The original article can be read here:

Monday 31 October 2022

Creationism in Crisis - The Evolution of Mediterranean Green Lizards

Discovering the unknown processes of the evolutionary history of green lizards in the Mediterranean - Universitat de Barcelona
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Despite the forlorn claims of Creationists that the Theory of Evolution (TOE) is a 'theory in crisis' which will soon be overthrown by their childish notion of magic and the interventions of an unproven, unexplained magical entity which makes chemistry and physics do things they couldn't do without it, in the real grownup world of science, the TOE continues to be the basis for understanding biodiversity, and continues to mesh exactly with what is known of climate change, geographical history and the development of ecosystems and ecological niches. This paper from the University of Barcelona, Catalonia, Spain, illustrates exactly that, and in effect is yet another casual and unintentional refutation of Creationism.

If Creationism qualified as a scientific theory, and was taken seriously by scientists working in the field, it would be the real 'theory in crisis', and would have been so ever since Darwin and Wallace explained biodiversity as a process not requiring intelligent agency, back in 1859 - hence the hysteria, disinformation and anti-science rhetoric of its proponents who make a living off the fears and superstitions of ignorant people and need them to stay that way.

In this paper, the scientists set out to reconstruct the evolutionary history of a group of lizards familiar to anyone who has holidayed in the Mediterranean area of Southern Europe and North Africa - the green and wall lizards.

The lizards are from two genera, the Lacerta and Timon. Being biologists the scientists looked at the factors that cause evolutionary diversification - environmental and ecological change and how these dynamic changes related to the genetic and phenotypic changes in the lizards.
As the University of Barcelona news release explains:

Saturday 8 October 2022

Biodiversity News - How Trees and Fungi Need Each Other and We Need Both

Pinus radiata and Amanita muscaria
Pinus radiata and Amanita muscaria
The ancient, intimate relationship between trees and fungi, from fairy toadstools to technicolour mushrooms

One of the most important symbiotic relationships on the planet is that between trees and fungi, without which we would have no trees, no forests, no timber, less oxygen and according to climatologists, very different weather patterns.

We would also not have all the species that depend on trees and forests which support one of the most diverse biota on the planet.

Trees themselves are an example of unintelligent design, as I explain in my book, The Unintelligent Designer: Refuting the Intelligent Design Hoax because their trunks and branches are the result of a massively wasteful arms race, as each tree competes with its neighbours to get its leaves above the canopy and into the sunlight. The result is a massive waste of energy and resource to build a structure which would have been unnecessary, had the ancestors of today's trees all being intelligently designed to stay at ground level and not compete for resources.

As a result of this unnecessary and wasteful complexity, another layer of complexity in the form of this symbiotic relationship between trees and fungi, which makes this possible, has evolved. Without it, trees could not obtain the nutrients they need or pump the water the leaves need to the top of the structure. So, from the perspective of the notion of intelligent [sic] design, we have massive waste and needless complexity to solve problems of the designer’s own incompetent making. So this relationship between fungi and trees represents one of the most glaring examples of the lack of foresight, planning and intelligence in whatever the design process behind it was.

From an evolutionary perspective, however, there is no need to explain bad design since there is no design process, as any intelligent person would understand it, involved. The result put the evolution of life on Earth on a trajectory that resulted in what we see today, and on which thousands of species are now dependent having evolved specialisations fitting them to live and survive in those niches by a process of co-evolving co-dependency - a predictable consequence of the process of evolution by natural selection.

The symbiotic relationship is between the roots of trees and the fungal hyphae in the soil, known as mycorrhizas. It is a lovely example of how Richard Dawkin's 'selfish genes' will form mutually beneficial alliances with the genomes of two or more organisms behaving like a single genome, albeit stored in different cells, co-evolving an every closer relationship, not of wasteful competition but of the more efficient cooperation, because cooperation benefits both organisms.
In another of the The Conversation series, 'Photos from the Field', Doctor Gregory Moore of The University of Melbourne and Associate Professor Mark Brundrett of the School of Biological Sciences, The University of Western Australia, explain this relationship, its evolutionary origins and why it is so important to the ecology of the planet. The open access article is reproduced here under a Creative Commons licence, reformatted for stylistic consistency. The original article can be read here:

The ancient, intimate relationship between trees and fungi, from fairy toadstools to technicolour mushrooms

Cortinarius kula
Credit: Mark Brundrett, Author provided
Gregory Moore, The University of Melbourne and Mark Brundrett, The University of Western Australia

Environmental scientists see flora, fauna and phenomena the rest of us rarely do. In this series, we’ve invited them to share their unique photos from the field.

You may be familiar with the red toadstool with white spots, which are often the homes of fairies in children’s stories. These toadstools are also a small part of grander magical story: they are striking examples of mycorrhizas.

Mycorrhizas (pronounced my-cor-rye-zas) is the name for fungi associated with the root systems of many plants including trees, shrubs, groundcovers and grasses. These relationships are mutually symbiotic, which means both members benefit.

Fungi have a deeply ancient evolutionary origin, and colonised land with the first plants around 500 million years ago to form these partnerships. We humans often underestimate their importance to the ecosystems that have shaped life on earth.

So let’s take a closer look at how this relationship works and why it’s so important for Australian ecosystems.

An intimate relationship

Fungi come in a beautiful diversity of shapes, sizes and colours. The following photos by my co-author Mark Brundrett are just a few examples of those growing in southwest Australia.

Mycorrhizas are not to be confused with fungi that decompose dead plant matter (saprophytes) or those that cause disease (pathogens).
Saprophytes are fungi that recycle nutrients, and these can also be large and impressive. They can create tree hollows, which provide shelter for nesting birds and other animals such as possums.

The ethereal ghost fungus, for example, is a saprophyte. It famously glows green in the dark, and recycles nutrients in ecosystems by breaking down dead wood.

The bioluminescent ghost fungus growing on a tree stump.
Credit: Mark Brundrett, Author provided
The primary role of mycorrhizas, on the other hand, is to provide resources such as phosphorus and nitrogen to flowering plants. They also effectively increase the absorptive surface area of the plant’s root system, allowing plants to take up much-needed water and nutrients so they grow better and more quickly.

In return, the plants provide carbohydrates, a product of photosynthesis, which mycorrhizas require to grow.

The yellow navel fungus Lichenomphalia chromacea forms a protective crust on soils in association with lichen fungi and algae.
Credit: Mark Brundrett, Author provided
Cortinarius vinaceolamellatus is a beautiful fungus that supports the growth of of tall eucalyptus forests.

Credit: Mark Brundrett, Author provided
This saprophyte is a relative of the common mushroom sold in shops (a species of Agaricus). Australian fungi can be toxic so leave them where they grow.
Credit: Mark Brundrett, Author provided
There are five different types of mycorrhizas, and two of these are particularly important in Australian ecosystems. One type is called “ectomycorrhiza”, where fungi wrap their hyphae (long, very fine hair-like structures that contact the soil) around the plant roots underground but don’t penetrate the root cells.

The other, called “endomycorrhiza”, is where fungi grow into the plant root, penetrating and branching within the root cells to form what look like little, microscopic trees. This is about as intimate a relationship between different types of organisms as you can get!

Microscopic cross-sectional view of an ectomycorrhizal pine tree root about 0.5 millimetres wide. This revels a labyrinth of black stained fungus hyphae surrounding root cells to form a nutrient exchange zone.
Credit: Mark Brundrett, Author provided
Arbuscular mycorrhizas are tiny tree-like growths inside the root cell where materials are exchanged with the host plant.

Credit: Mark Brundrett, Author provided
Mushrooms as big as dinner plates

We often become aware of the presence of mycorrhizas only when conditions for reproduction are right, and a mushroom or toadstool emerges from the ground. Such conditions may only occur every five to ten years. For some species, there may be centuries between reproductive events.

For many of us, our experience with mycorrhizal fungi begins in very early childhood when we first catch sight of those spotty red and white toadstools, called the fly agaric or Amanita muscaria.

These fungi are often depicted in children’s book illustrations, such as Little Red Riding Hood, Jack and the Beanstalk, and a number of Enid Blyton’s tales. I recall conifers, such as pine trees, often growing nearby in the background of these pictures. This was no coincidence, Amanita muscaria forms mycorrhizal associations with many conifers, as well as oaks.

The fly agaric or Amanita muscaria is a striking fungus often seen in children’s books.
Credit: Mark Brundrett, Author provided
The fame of Amanita muscaria also arises from the hallucinogenic properties it sometimes has, but this fungus is most likely to have toxic consequences for those who eat it. It was also used as a natural insect killer.
Credit: Mark Brundrett, Author provided
The mycorrhizal fungi associated with eucalypts can be less showy, with many being 75-100 millimetres across and a creamy, light tan in colour. They quite often pop up in home gardens, frequently in lawns, where they’re very obvious and usually within 4 to 5 metres of a tree trunk.

Others are spectacular, including the bright purple, orange or green Cortinarius species shown in the photos below. In fact, the beauty and diversity of our fungi now supports a new ecotourism industry in Australia, particularly in Tasmania.

The bright green mushroom Cortinarius austroveneta is found in tall eucalypt forests.
Credit: Mark Brundrett, Author provided
Cortinarius erythrocephalus is another brilliantly coloured mycorrhizal forest mushroom.
Credit: Mark Brundrett, Author provided
Cortinarius rotundisporus, also known as the elegant blue webcap, can be found in southern Australia.

Credit: Mark Brundrett, Author provided
Some fungi are most impressive in the spring following bushfires, such as the abundant orange cup fungus shown below that stabilises ash beds.
The orange cup fungus Anthrocobya muelleri is found briefly after severe fires.
Credit: Mark Brundrett, Author provided
Indeed, most plants form mycorrhizal associations. Those that don’t include plants from the common vegetable families Brassicaceae (think broccoli, cauliflower, kale) and Chenopodiaceae (spinach, beetroot, and quinoa). Neither do members of the Proteaceae family, such as native banksias and grevilleas. These plants invest in very complex roots rather than fungal associations.

This is a species of Ramaria, a mycorrhizal genus comprising approximately 200 species of coral fungi.
Credit: Mark Brundrett
Phlebopus marginatus is possibly Australia’s largest terrestrial mushroom, with one found in Victoria weighing in at 29 kilograms.
Credit: Mark Brundrett, Author provided
Who’s really in control?

Because we are so familiar with many of the plants in our environment, we are inclined to think it’s them that control their relationship with mycorrhizal fungi.

But it is possible mycorrhizal fungi exercise much more control. Or perhaps, the relationship is a perfect mutualistic symbiosis where partners share everything, including control, equally. We just don’t know yet.
Members of the fungus kingdom work in synchrony with the plant kingdom to support all terrestrial life, including animals such as ourselves. We may not think about fungi very often, but we cannot survive without them.

One of the surprise elements of Douglas Adam’s Hitchhiker’s Guide to the Galaxy, was that the Earth and its inhabitants existed as part of an experiment designed and controlled by white laboratory mice.

I sometimes wonder if the fate of the Earth’s terrestrial ecosystems rests on mycorrhizal fungi. If so, perhaps we need to show them greater respect.

The Conversation Gregory Moore, Doctor of Botany, The University of Melbourne and Mark Brundrett, Adjunct Associate Professor, School of Biological Sciences, The University of Western Australia

Published by The Conversation.
Open access. (CC BY 4.0)

Biodiversity News - Australia's Exotic Invertebrates

One shiny green beetle on top of another
Mating Repsimus scarab beetles
Credit: Nick Porch
Photos from the field: zooming in on Australia’s hidden world of exquisite mites, snails and beetles | The Conversation

Most people will be familiar with Australia's unique set of mega- (and not so mega) fauna such as kangaroos, wallabies, koalas, dingoes, wombats, marsupial mice, and of course the egg-laying monotremes, the platypus and the echidna or spiny ant-eater, but how many people are aware of the equally unique and often bizarre array of invertebrates, apart from the dangerous spiders, that is?

In this article in The Conversation, 'Photos from the Field' series, from January 2021 Nick Porch, Senior Lecturer in Environmental Earth Science, Deakin University, Australia, shares some photographs of a small sample of the several hundred thousand uniquely Australian organisms, most of which will be almost completely unknown, even to Australians.

Creationists might like to ignore the bits about 150 million years, Gondwana and allusions to plate tectonics, in the explanation for why Australian bugs tend to be more closely related to South American bugs than those from New Zealand. Evidence of evolution on an old Earth will probably upset them.

The article is reprinted here under a Creative commons licence, reformatted for stylistic consistence. The original can be read here:

Thursday 22 September 2022

Malevolent Designer News - Creationism's Divine Malevolence is Killing the Frogs That Help Protect Us from Malaria

Malaria Spike Linked to Amphibian Die-Off | UC Davis
Atelopus_zeteki
Panamanian golden frog, Atelopus zeteki, a victim of the fungus, Batrachochytrium dendrobatidis.
On the face of it, there is no connection between frogs and malaria, but scientists have discovered a correlation between the decline of frogs due to the fungus, Batrachochytrium dendrobatidis, and a spike in malaria cases in parts of Latin America, particularly in Costa Rica and Panama.

Readers may remember how I described the world-wide devastation of amphibian populations with the fungus, B. dendrobatidis (Bd), and how a team of researchers from the University of California at Davis had reported a link between these deaths and an increase in malaria, probably due to this removal from the ecosystem of major predators on mosquitos.

To be a Creationists is to believe this fungus, the effects it is having on global amphibian populations and the knock-on effects this is having on the ecosystem and human health, is the intended outcome of a supernatural intelligent [sic] designer, with this obviously malevolent intent. I also write about this fungus in my popular, illustrated book, The malevolent Designer: Why Nature's God is not Good, as an example of what can only be described as malevolent intent, if the modification to this otherwise harmless soil fungus to turn it against the world's amphibians, really was the work of Creationists' putative intelligent [sic] designer, as their dogma obliges them to believe. The mystery, as ever, is why Creationists would prefer us to see their favourite god as a malevolent monster, forever scheming to increase the amount of suffering in the world, rather than ascribe these things to a natural process with no mind or morality involved.

The same UC Davis team has now reported a close correlation between the major die-off of amphibians in Costa Rica and Panama with a spike in malaria cases in the region. At the spike’s peak, up to 1 person per 1,000 annually contracted malaria that normally would not have had the amphibian die-off not occurred, the study found.

According to the UC Davis news release:

Friday 16 September 2022

Climate Emergency News - How to Convince the Loonies

Scienctific ignorance proudly on display

Shutterstock

Inside the mind of a sceptic: the ‘mental gymnastics’ of climate change denial

How do you convince the climate change denying loonies to believe the evidence of their own eyes?

It's about as hard as convincing a Creationist that evidence-based science is right and evidence-free superstitions is wrong, as this article in The Conversation by Rachael Sharman, Senior Lecturer in Psychology, and Professor Patrick D. Nunn, Professor of Geography, School of Law and Society, both of the University of the Sunshine Coast, Queensland, Australia, explains. It is about their research into the causes of climate scepticism in Australia, but the findings have a wider application, especially in the USA where scepticism is high, following the scientifically illiterate Donald Trump's lead, and the pro-Trump, QAnon conspiracy theorists' disinformation campaign.

Their article is reprinted under a Creative Commons license, reformatted for stylistic consistency. The original article can be read here.

Monday 12 September 2022

Climate Emergency News - Earth is in Imminent Danger as Climate Tipping Points are Reached

World at risk of passing multiple climate tipping points above 1.5°C global warming - Stockholm Resilience Centre
Researchers see signs of destabilisation already in parts of the West Antarctic and Greenland ice sheets, in permafrost regions, the Amazon rainforest, and potentially the Atlantic overturning circulation as well.
Photo: Katrin Lindbäck/azotelibrary.com

14. The Meaning of Life


You are the end-point of your own genes' evolution. You are the descendant of survivors, each of whom bred successfully and never once failed – for 3.5 billion years! Think about that for a moment. In a world in which, for very many individuals, an early death and failure to breed were by far the most likely outcome, not one single one of your ancestors failed to produce at least one offspring. If they had failed, your gene-line would have ended there and then. You are the product of billions of passes through the sieve of selection and at every pass your gene-line passed the fitness test. Your genes are good at surviving; and you are unique in the history of the cosmos. The likelihood of you being alive at all is almost vanishingly small and yet here you are. Never before has anyone with your combination of genes, your collection of atoms and your history existed.

And you never will again.

Almost all your genes have spent much longer being something else than they have being human. Your ancestors were there when Europe and Africa split off from the Americas. They were there as small mammal-like reptiles when dinosaurs ruled the earth. They saw pterodactyls flying overhead. They survived the mass-extinction which ended the dinosaurs’ reign and they saw the birds and the bats grow wings and take to the air.

Your ancestors swam in the Cambrian seas and crawled out onto the land as early air-gulping fish destined to become four–legged animals with lungs. Your ancestors lived through the Carboniferous era when dense forests of tree ferns grew in steaming jungles where dragonflies with meter-wide wings flew. They saw the trees fall and form the piles of vegetation destined to be coal as the climate changed and the Carboniferous forests collapsed. They saw the first flowering plants as plants and insects formed their mutual-benefit society.

Saturday 3 September 2022

Evolution News - How Australia and New Guinea Got Their Diverse Populations of Rodents

A hopping mouse of the Notomys genus. Hopping mice have evolved highly efficient kidneys to deal with the low water environments of Australia’s deserts.
Credit: David Paul/Museums Victoria
'Impressive rafting skills': the 8-million-year old origin story of how rodents colonised Australia

I've remarked before about how well the Theory of Evolution as an explanation for the biodiversity in animals, plants and fungi we see all around us, consistently meshes with other strands of science. For example, plate tectonic and the timing of the splits and collisions of land masses that have occurred exactly coincides with the deduced evolutionary divergence in major branches of the tree of life, so explaining the relationships between species on unconnected land masses such as Africa and South America or Europe and North America.

Here we have an account of the colonisation of Australia and New Guinea and neighbouring islands by rodents, and their evolutionary diversification, that exactly meshes with the rise and fall of sea level during cycles of glaciation and glacial regression, and with known periods of mountain building in New Guinea that transformed it from a group of small islands into a single large mountainous island.

The study, led by Dr. Emily Roycroft, a postdoctoral research fellow with the Australian National University's Division of Ecology and Evolution, Research School of Biology, Acton, ACT, Australia, and Pierre-Henri Fabre, of the Institut des Sciences de l’Evolution, Université de Montpellier, Montpellier, France, with colleagues from the Australian National University, and the Science Department, Museums Victoria, Melbourne, Victoria, Australia, is published in the journal,Current Biology. Sadly, the main body of the paper is behind a paywall, despite the journals claimed support for open access publishing. However the abstract is available here.

Lead author, Dr Emily Roycroft has also written about their research in the open access online magazine The Conversation which, if you want factual, objective analysis of news, is well worth reading. Her article is reproduced here under a Creative Commons license, reformatted for stylistic consistence. The original article can be read here.

Thursday 1 September 2022

Unintelligent Design - Giant Viruses Designed Only to Kill Another Of the Designer's Creation?

Milne Fiord Epishelf Lake
(A) General location and local geography of the Milne Fiord epishelf lake in 2015 (adapted from reference 7). Gray areas of map indicate lake ice detected by RADARSAT-2 imagery. (B) Cartoon showing accumulation of freshwater behind Milne Ice Shelf and the bottom topography of Neige Bay.
Giant Viruses in Climate-Endangered Arctic Epishelf Lake | ASM.org

Readers may recall how I wrote very recently about a 'giant virus' that is designed to infect and kill an amoeba, but whatever designed it, also designed a bacterium to defend the amoeba from it, in a seemingly pointless excercise in design for no apparent reason. That's if you see everything in terms of the childish intelligent [sic] design hoax.

Now scientists have discovered another 'giant' virus' that lives in a remote arctic lake and does nothing other than kill the cyanobacteria that also live there, which, presumably, Creationists believe were designed by the same designer who designed the 'giant virus'.

If you can't see the flaw in the reasoning that this must have been designed by a intelligent designer, then it's highly likely that you have fallen for the intelligent [sic] design hoax yourself, or your definition of 'intelligent' is at odds with the way the rest of the English-speaking world uses it.

Just a quick reminder about these "giant viruses": These are a goup of very large viruses that are several times larger than normal visues such as the COVI-19-causing SARS-CoV-2. They have a relatively complex genome which includes genes normally only found in cellular animals, plants and fungi. They are harmlees to humans since they only infect single-celled organisms such as amoebae and, in this case, cyanobacteria. They are relatively common in a marine environment and can have an impact at the lowest level of the food chain by killing the organisms that recycle nutrients from dead organisms from higher up the food chain. How and why they got their complex genomes is the current subject of study, but may be the result of horizontal gene transfer during evolutionary arms races between them and their hosts.

The discovery was made by microbiologists from Université Laval, Québec, Québec, Canada. Their findings are published, open access in the American Society for Microbiology (ASM) journal, Applied and Environmental Microbiology. How the discovery was made and its significance in terms of climate change are explained in the ASM news release:

Saturday 6 August 2022

The Recent Improvement in the Great Barrier Reef Might Not Be What it Seems.

Hyde Reef on the central Great Barrier Reef. Scientists have recorded the highest levels of coral cover in 36 years in parts of the reef.
Photograph: Australian Institute of Marine Science
One of the most biodiverse marine environments on Earth is Australia's Great Barrier Reef which has been in the news recently as an ecosystem under severe threat from climate-change related problems such as global warming and severe tropical cyclones, as well as the expanding range of the Crown of thorns starfish, which feeds on living coral, destroying large areas of it.

However, recent news seems to indicate that the central and northern sections of the Great Barrier Reef are showing encouraging signs of recovery, although the southern section remains under threat.

But the news might not be as good as the pictures seem to indicate, as Dr. Zoe Richards, PhD, senior research fellow at Curtain University, Western Australia and Marine Invertebrate Curator, Western Australian Museum, explains in an article in The Conversation. Her article is reprinted here under a Creative Commons license, reformatted for stylistic consistency.


Record coral cover doesn’t necessarily mean the Great Barrier Reef is in good health (despite what you may have heard)


Shutterstock

Zoe Richards, Curtin University

In what seems like excellent news, coral cover in parts of the Great Barrier Reef is at a record high, according to new data from the Australian Institute of Marine Science. But this doesn’t necessarily mean our beloved reef is in good health.

In the north of the reef, coral cover usually fluctuates between 20% and 30%. Currently, it’s at 36%, the highest level recorded since monitoring began more than three decades ago.

This level of coral cover comes hot off the back of a disturbing decade that saw the reef endure six mass coral bleaching events, four severe tropical cyclones, active outbreaks of crown-of-thorns starfish, and water quality impacts following floods. So what’s going on?

High coral cover findings can be deceptive because they can result from only a few dominant species that grow rapidly after disturbance (such as mass bleaching). These same corals, however, are extremely susceptible to disturbance and are likely to die out within a few years.

The Great Barrier Reef Long-Term Monitoring annual summary | AIMS.

The data are robust

The Great Barrier Reef spans 2,300 kilometres, comprising more than 3,000 individual reefs. It is an exceptionally diverse ecosystem that features more than 12,000 animal species, plus many thousand more species of plankton and marine flora.

The reef has been teetering on the edge of receiving an “in-danger” listing from the World Heritage Committee. And it was recently described in the State of the Environment Report as being in a poor and deteriorating state.


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To protect the Great Barrier Reef, we need to routinely monitor and report on its condition. The Australian Institute of Marine Science’s long-term monitoring program has been collating and delivering this information since 1985.

Its approach involves surveying a selection of reefs that represent different habitat types (inshore, midshelf, offshore) and management zones. The latest report provides a robust and valuable synopsis of how coral cover has changed at 87 reefs across three sectors (north, central and south) over the past 36 years.

2018: A bare patch of reef at Jiigurru, Lizard Island in 2018 after most of the corals died in the 2016/2017 coral bleaching event.
Andy Lewis, Author provided.


2022: By 2022, the same patch of reef was covered by a vibrant array of plating Acropora corals.
Andy Lewis, Author provided.


The results

Overall, the long-term monitoring team found coral cover has increased on most reefs. The level of coral cover on reefs near Cape Grenville and Princess Charlotte Bay in the northern sector has bounced back from bleaching, with two reefs having more than 75% cover.

In the central sector, where coral cover has historically been lower than in the north and south, coral cover is now at a region-wide high, at 33%.

The southern sector has a dynamic coral cover record. In the late 1980s coral cover surpassed 40%, before dropping to a region-wide low of 12% in 2011 after Cyclone Hamish.

The region is currently experiencing outbreaks of crown-of-thorns starfish. And yet, coral cover in this area is still relatively high at 34%.

Based on this robust data set, which shows increases in coral cover indicative of region-wide recovery, things must be looking up for the Great Barrier Reef – right?

Are we being catfished by coral cover?

In the Australian Institute of Marine Science’s report, reef recovery relates solely to an increase in coral cover, so let’s unpack this term.

Coral cover is a broad proxy metric that indicates habitat condition. It’s relatively easy data to collect and report on, and is the most widely used monitoring metric on coral reefs.

The finding of high coral cover may signify a reef in good condition, and an increase in coral cover after disturbance may signify a recovering reef.

Acropora hyacinthus, a pioneering species of coral at Lizard Island.
Zoe Richards, Author provided
But in this instance, it’s more likely the reef is being dominated by only few species, as the report states that branching and plating Acropora species have driven the recovery of coral cover.

Acropora coral are renowned for a “boom and bust” life cycle. After disturbances such as a cyclone, Acropora species function as pioneers. They quickly recruit and colonise bare space, and the laterally growing plate-like species can rapidly cover large areas.

Fast-growing Acropora corals tend to dominate during the early phase of recovery after disturbances such as the recent series of mass bleaching events. However, these same corals are often susceptible to wave damage, disease or coral bleaching and tend to go bust within a few years.

Juvenile branching Acropora colonising bare space after a bleaching event.
Zoe Richards, Author provided
Inferring that a reef has recovered by a person being towed behind a boat to obtain a rapid visual estimate of coral cover is like flying in a helicopter and saying a bushfire-hit forest has recovered because the canopy has grown back.

It provides no information about diversity, or the abundance and health of other animals and plants that live in and among the trees, or coral.

Cautious optimism

My study, published last year, examined 44 years of coral distribution records around Jiigurru, Lizard Island, at the northern end of the Great Barrier Reef.

It suggested that 28 of 368 species of hard coral recorded at that location haven’t been seen for at least a decade, and are at risk of local extinction.

Lizard Island is one location where coral cover has rapidly increased since the devastating 2016-17 bleaching event. Yet, there is still a real risk local extinctions of coral species have occurred.



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While there’s no data to prove or disprove it, it’s also probable that extinctions or local declines of coral-affiliated marine life, such as coral-eating fishes, crustaceans and molluscs have also occurred.

Without more information at the level of individual species, it is impossible to understand how much of the Great Barrier Reef has been lost, or recovered, since the last mass bleaching event.

Based on the coral cover data, it’s tempting to be optimistic. But given more frequent and severe heatwaves and cyclones are predicted in the future, it’s wise to be cautious about the reef’s perceived recovery or resilience.

The Conversation

Zoe Richards, Senior Research Fellow, Curtin University

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