Refuting Creationism - Evolution of Syphilis - How Did It Survive On The Ark?

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The archeological site of Tequendama 1 at the border of the Sabana de Bogotá, Cundinamarca, Colombia.

© Angélica Triana.

Ancient DNA pushes back record of treponemal disease-causing bacteria by 3,000 years

Creationists who take the biblical Flood story literally have a problem that rarely features in illustrations of Noah’s floating menagerie: what happened to the infectious diseases? Saving their animal hosts would also have provided opportunities to save their pathogens. Conversely, exterminating the hosts would have threatened the survival of the very organisms that depended on them. A supposedly fresh start for life on Earth would therefore require an explanation for why so many ancient infections apparently came along for the ride.

Many pathogens, including those that infect humans are also host-specific, so that begs the question of which of the human passengers were host to the sexually-transmitted diseases, and how, if they were 'righteous' people, did they acquire them? The authors of the tale knew nothing of microorganisms or the germ theory of disease, of course, so saw no reason to explain all that stuff.

A discovery reported in Science on 22 January 2026 gives that question another uncomfortable historical dimension. An international research team has reconstructed a roughly 5,500-year-old genome of Treponema pallidum from human remains at the Tequendama I rock shelter in Colombia. This is the bacterial species whose recognised subspecies cause syphilis, yaws and bejel. The findings are described in a research paper in Science by Davide Bozzi and colleagues.

The ancient bacterium belonged to a previously unknown branch of the family tree, a sister lineage to all the genetically characterised subspecies of T. pallidum. It should therefore not be described simply as a case of modern syphilis in a prehistoric person. Nevertheless, its presence establishes that this group of pathogens was infecting people in South America long before European contact—and before the date commonly assigned to Noah’s genocidal flood.

The evolutionary history reaches further back still. The researchers’ molecular-clock analysis estimates that the ancient lineage and the other known lineages shared a common ancestor approximately 13,700 years ago. That estimate carries substantial uncertainty, with a range of roughly 6,800–20,600 years, but its central value places this ancestral population well before even the more generous versions of the usual young-Earth creationist chronology. These are estimates reconstructed from genetic evidence, not dates obtained by adding together the supposed lifespans of biblical patriarchs.

The Flood problem deserves careful examination. Genesis is ambiguous on the point. On the one hand it describes the destruction of terrestrial, air-breathing life; on the other hand it specifically refers to all living substance being destroyed. Although the authors were unaware of microorganisms so were not writing a microbiology textbook, a supposedly omniscient, creator god would not have been constrained by the ignorance of primitive pastoralists. But then these obligate parasites would not have survived the destruction of their hosts outside the ark, so the question of what 'life' the Bible is referring to become moot. If you subscribe to the Ark myth, you have to accept that any survivors must have been carried in the Ark.

The discovery of an ancient relative of syphilis does not establish that the particular Colombian lineage survived to the present. But neither qualification explains how the surviving branches of an ancient, host-associated pathogen could have persisted through the alleged destruction of their hosts outside the Ark. Within that narrative, infected passengers or another explicitly justified means of survival would be needed. Simply overlooking the pathogens does not solve the problem.

There appears to be no way to avoid the conclusion that, if the Ark myth were true, Noah and his family must have been carrying the obligate, species-specific sexually-transmitted diseases, syphilis, gonorrhoea and chlamydia as well as pubic lice and an assortment of intestinal worms.

Evolution, meanwhile, supplies the framework that makes the discovery intelligible: common ancestry, branching descent and genetic change over time. The scientists can place an unfamiliar ancient genome within a family tree and investigate when its lineage diverged from its relatives. There is no need to invent a separate creation event for each disease, or a miraculous rescue operation to carry ancient infections across an otherwise universal catastrophe. There is a history to reconstruct—and the evidence is preserved in the DNA.

Unintelligent Design - How The Immune System Can Go Rogue And Cause Premature Ageing

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Reversing hallmarks of rapid aging by silencing a cellular alarm system

Photo credit: Eitan Moses

How the Immune System Rewrites Rapid Aging

One of the difficulties creationists have with presenting the immune system as evidence of intelligent design is explaining why something supposedly designed to protect us so often contributes to our illnesses. A defence system that can turn the body's own damaged DNA into a trigger for further damage is hardly an obvious example of competent, benevolent engineering. It is, however, entirely understandable as a product of evolution: a collection of mechanisms favoured for their benefits, constrained by their history, and carrying costs that natural selection has never eliminated.

Research from the Hebrew University of Jerusalem provides a revealing example. In a paper published in Genes & Development, Marva Bergman and colleagues investigated how a DNA-sensing protein called cGAS contributes to disorders involving defective DNA repair; the body's response to genetic damage can itself become an important source of harm.

The underlying problem is straightforward. DNA appearing in the fluid surrounding a cell's nucleus can be a warning of infection. cGAS helps detect it and activates an inflammatory defence response. But the DNA need not belong to a virus: damaged cells can expose their own DNA to the same sensor. Consequently, an alarm that normally helps protect against infection can sustain inflammation even when there is no invading organism to fight. The response then risks damaging the very tissues it ordinarily helps defend.

The researchers modelled two human DNA-repair disorders, ataxia-telangiectasia and Bloom syndrome, in turquoise killifish, Nothobranchius furzeri. In the ataxia-telangiectasia model, disrupting the gene for cGAS partially alleviated reproductive defects, cellular senescence in the liver, and inflammation in the cerebellum. Several measures of genome instability also improved, consistent with cGAS having additional effects inside the nucleus, beyond its familiar inflammatory role.

There was, however, a crucial complication: losing cGAS in fish without the underlying repair defect made pathology and genome instability worse. This was therefore no demonstration that the immune system contains a universally dispensable component, nor a discovery that switching off one gene reverses normal ageing. The same protein could be beneficial or harmful depending on the biological circumstances.

That is precisely where the evolutionary explanation becomes useful. A sensor that responds to DNA in an unusual location offers a broadly effective means of detecting danger, but that signal does not identify the DNA's origin with certainty. Such a system needs safeguards and regulation, and its usefulness does not guarantee that those safeguards will work under every condition. Natural selection can preserve a mechanism whose overall benefits outweigh its costs; it cannot anticipate every future mutation or guarantee freedom from disease.

The study did not test the evolutionary history of cGAS, but its findings illustrate the kind of context-dependent compromise evolution produces. For intelligent-design advocates, the awkward question is why an allegedly perfect designer would make protection and self-inflicted damage so intimately connected. For evolutionary biology, the useful question is how that connection works—and whether understanding it can help us reduce the harm.

This is just one example of how the human body is not a work of perfect design, but the product of sub-optimal compromises constrained by contingent history and lacking in foresight, where additional layers of complexity are not hallmarks of intelligent design that creationists like to imagine, but of the need for controls and compensations for problems created by earlier iterations of the evolutionary cycle. Many more are explained in my book, The Body Of Evidence: How The Human Body Refutes Intelligent Design

Refuting Creationism - Bigamous Beetles Have Better Babies - Observed Evolution Over 15 Years

Red flour beetle, Tribolium castaneum.

By Udo Schmidt from Deutschland Tribolium castaneum (Herbst, 1797) CC BY-SA 2.0, Link

Red flour beetle, Tribolium castaneum

Source: Wikipedia - Public Domain, Link

How sex can help save species from extinction | UEA

One of the recurring claims of creationist apologetics is that mutations condemn living populations to relentless genetic deterioration — a supposedly inevitable decline which evolution cannot overcome. What this argument neglects is that mutations do not operate in isolation: selection influences which genetic variants pass to subsequent generations. Now, a long-running experiment with red flour beetles has provided direct genomic evidence that competition for mates can help remove harmful variants, leaving populations more resistant to extinction.

The research, led by Michael D. Pointer, of the University of East Anglia Department of Biological Sciences, described in a report in Proceedings of the National Academy of Sciences of the USA (PNAS), also addresses an interesting evolutionary question: why is sexual reproduction so widespread despite its considerable costs? Finding mates takes time and energy, competition can be costly, and reproduction requires contributions from individuals which do not themselves produce eggs. One possible compensating benefit is that competition for reproductive success helps prevent damaging mutations from accumulating.

The researchers tested this idea using populations of the red flour beetle, Tribolium castaneum, maintained under stronger or weaker sexual selection. After 156 generations, whole-genome sequencing showed that populations exposed to stronger sexual selection carried fewer genetic variants predicted to be harmful. Their overall genetic diversity, however, remained comparable. Selection had reduced the burden of damaging variants without a corresponding reduction in variation across the genome.

The distinction matters. Genetic diversity is often used as an indicator of a population’s prospects, but the amount of variation cannot tell us everything about its effects. In this experiment, the estimated burden of harmful variants was a better predictor of extinction under inbreeding than diversity alone. Populations could retain similar amounts of genetic variation while differing in their vulnerability to genetic stress.

Creationism Refuted - The 'American Cheetah' Was Not A Cheetah - Convergent Evolution

An artistic rendering of two Miracinonyx, one in Beringia preying mainly on fish and one in the Lower 48 feeding on pronghorn antelope.

Credit: Julius Csotonyi (CC-BY SA)

The feline Miracinonyx trumani got its nickname, the “American cheetah,” from its slender, long-limbed body, reminiscent of an African cheetah. While the extinct Pleistocene predator did hunt down speedy prey, such as saiga antelope (illustrated), a new study shows some animals ate a diet of mostly fish, suggesting the species was more adaptable than previously thought.

Velizar Simeonovski

The extinct American ‘cheetah’ was not a cheetah after all | EurekAlert!

A cat can look rather like a cheetah without being a cheetah, and a predator with long legs need not spend its life chasing antelopes. That is the lesson from new research into the extinct “American cheetah”, Miracinonyx trumani, whose ancient DNA and dietary chemistry reveal a more complicated animal than its nickname suggests. It is also another example of why evolutionary relationships have to be investigated through evidence, rather than decided by resemblance and fitted into preconceived categories.

The study, led by Molly Cassatt-Johnstone of the University of California, Santa Cruz, and published in Current Biology, analysed ancient DNA from four specimens. It strengthens earlier evidence that Miracinonyx was more closely related to living pumas than to true cheetahs, with the puma and Miracinonyx lineages estimated to have separated approximately 2.6 million years ago. Its cheetah-like anatomy therefore reflects convergent evolution: the independent evolution of similar features in different lineages.

There is an immediate difficulty here for young-Earth creationism. The evolutionary separation of these cats occurred millions of years before the supposed “Creation Week”, while the three Yukon specimens themselves are approximately 31,000 years old. These were animals living, feeding and dying in an established ecosystem long before the entire universe supposedly existed according to a literal reading of Genesis. Their identification also extends the animal’s known distribution far into northern Canada. Science News.

Refuting Creationism - The Evidence For Denisovans Just Keeps Getting Better

Map showing the geographic locations of Denisovan fossils determined by molecular evidence. The colours of the map reflect a combination of elevation and environmental context.

From: Rao, H., Xing, S., Ruan, Q. et al. (2026).

Denisovan Radius Discovered for First Time in Southwest China----Chinese Academy of Sciences

Fragments of Denisovan teeth, and bones recovered from Bianfu Cave in Southwest China

From: Rao, H., Xing, S., Ruan, Q. et al. (2026).

Long before the universe supposedly existed, according to Young-Earth creationism, human relatives were making tools and processing animal carcasses in what is now south-western China. Two complementary papers in Nature reveal another chapter of this inconvenient prehistory, combining ancient proteins, fossil anatomy and archaeology to investigate the Denisovans of Bianfu Cave in Yunnan Province.

In the first paper, Huiyun Rao and colleagues identify five Denisovan remains: two teeth, two skull fragments and part of a radius, one of the forearm bones. These come from layers dated to approximately 167,000–134,000 years ago. The radius provides the first securely identified example of this bone from a Denisovan, adding valuable evidence about a human lineage whose skeleton remains frustratingly poorly known.

The identification depended on proteins preserved within the fossils. Researchers screened more than 60,000 bone fragments before selecting promising specimens for molecular analysis. Surviving protein sequences contained diagnostic Denisovan variants, allowing small fragments to acquire an evolutionary identity that their appearance alone could not securely establish. The study also places another confirmed Denisovan locality within a previously conspicuous gap in their known Asian distribution.

A second paper in Nature, by Qijun Ruan and colleagues examines the wider archaeological record. Evidence of cave use extends from approximately 190,000 to 70,000 years ago — a span of around 120,000 years. Its inhabitants hunted medium-sized and large animals, produced stone tools and made extensive use of bones without elaborate modification. These practices suggest practical exploitation of available materials in a landscape of coniferous forest and forest-steppe.

An important distinction remains: the identified Denisovan fossils cover only part of that longer sequence. Attributing the wider archaeological record to Denisovans is the researchers’ most economical interpretation, rather than direct proof that Denisovans occupied the cave throughout. Nor does the sequence establish uninterrupted residence. That qualification illustrates how scientific conclusions are bounded by the evidence.

Refuting Creationism - Why Nature Creates Fossils Of Different Ages In The Same Deposit - Unlike The Mythical Genocidal Flood

AI depiction of how shells accumulate in sediment

ChatGPT 6 Astra

Collection of creatures that can disturb sediment and relocate shells.

Florida Museum.

Paleontologists spent 20 years carbon-dating thousands of marine fossils, then used them to decode a process fundamental to Earth’s history – Research News

A fossil bed is not necessarily a collection of animals that lived and died together. Two shells lying side by side can belong to creatures whose lives were separated by hundreds or thousands of years. For creationists who interpret fossil-bearing deposits as the products of a single, year-long biblical Flood, that raises an awkward question: how much history is actually represented within a supposedly catastrophic snapshot?

An international study, published in PNAS, brings substantial evidence to bear on that question. Drawing on two decades of research, the team assembled dates for more than 7,500 marine fossils, obtained using radiocarbon dating and other methods. They investigated “time averaging”: the mixing of remains from different generations within the same assemblage.

Their principal finding was that sediment accumulation rate is the strongest predictor of this mixing. Where sediment accumulates slowly, remains from successive generations can collect before permanent burial. Faster accumulation generally limits that opportunity. Comparisons between observations and computer simulations showed that sedimentation exerted a stronger influence than the other factors examined, including mixing by burrowing animals and the destruction of skeletal remains. These findings concern the relatively recent fossil record; their application to much deeper time still requires testing.

The creationist response cannot therefore consist merely of declaring that the fossils were all buried by Noah’s Flood. Burial and death are different events. A sudden event could gather older shells and redeposit them, but that would concede that the resulting assemblage contains a history predating the catastrophe. It would still be necessary to explain the age differences, the source of the older material and the surrounding sedimentary evidence.

Nor does a vague appeal to “errors in carbon dating” solve the problem. An identical age offset applied to every specimen would leave their age differences intact. Other proposed errors would need to be specified, quantified and shown to account for the observed pattern. Simply assuming that inconvenient measurements must be wrong is not an explanation; it is a refusal to accept evidence.

The significance of this research is that the history preserved within fossil assemblages can be investigated and measured. Scientists can ask how much time a collection represents, identify the processes responsible and test their explanations against thousands of specimens. For Flood geology, the challenge is to produce an equally convincing account of those observations. A biblical narrative, however confidently repeated, supplies neither the measurements nor the explanation.

Creationism Refuted - Arrowheads From Uzbekistan Shoot Creationism Down

Micropoints from Obi-Rakhmat, layers 20-21

From: Plisson H, et al (2025)

Obi-Rakhmat rock shelter

From: Plisson H, et al (2025)

Arrowhead points found in Central Asia could prove the presence of ‘Homo sapiens’ 80,000 years ago

A handful of tiny stone points from a rock shelter in Uzbekistan presents several difficulties for creationism. They come from deposits dated to around 80,000 years ago, placing their manufacture tens of thousands of years before the supposed creation of the Universe according to young-Earth biblical literalism. They belong to an archaeological record that demands an explanation grounded in prolonged human occupation and sediment accumulation. And their publication demonstrates something creationist propagandists routinely deny: scientists can publish evidence that challenges established interpretations of human history.

The research, by Hugues Plisson and an international team, appeared in PLOS One. Examining stone artefacts from the oldest occupation layers at Obi-Rakhmat, the researchers identified damage consistent with their use as projectile tips. Particularly intriguing are tiny triangular points whose dimensions suggest mounting on light, arrow-like shafts. The authors interpret these as possible evidence of archery approximately 80,000 years ago. Their further suggestion—that the technology indicates the presence of *Homo sapiens*—is an inference from archaeological comparisons, rather than a definitive identification of the toolmakers.

For young-Earth creationism, the chronological problem exists regardless of whether that interpretation ultimately prevails. Disagreement about which human population made an ancient weapon does nothing to bring its manufacture within a biblical timescale. Uncertainty about one aspect of the evidence is not uncertainty about everything, however useful that confusion might be to those trying to dismiss an inconvenient past.

The site also raises an awkward question for advocates of a recent, catastrophic global flood. Its archaeological sequence extends through more than ten metres of deposits representing tens of thousands of years. This is evidence of a lengthy local history that any alternative account must explain. It would be too sweeping to claim that no stone artefact could survive a flood; the stronger objection concerns the preservation and formation of the deposits in which those artefacts occur. Invoking a catastrophe that supposedly reshaped the entire Earth does not explain an ordered archaeological sequence merely by adding water to the story. The paper itself does not investigate Noah’s flood, but its findings add to the ancient history that biblical literalists must somehow compress into a few thousand years.

Creationism Refuted - Complex Symbiosis Between Animals And Microbes - 550 Million Years Before 'Creation Week'

Ediacaran tubular fossil Conotubus (inset: symbiotic chemosynthetic bacteria)

AI-generated image (ChatGPT 6 Astra)

Ancient fossil from China reveals animal-microbe partnerships dating back 550 million years

Some 550 million years ago, long before the world existed according to a literal reading of Genesis, an early animal may already have been exploiting the biochemical abilities of bacteria. New research on the Ediacaran tubular fossil Conotubus suggests that animal–microbe partnerships have a history extending back towards the beginnings of animal life. For creationism, the inconvenience is twofold: the immense timescale, and a biological arrangement that makes excellent evolutionary sense but raises awkward questions about supposedly intelligent design.

The study, led by Zhenfei Wang and Yongbo Peng of Nanjing University and published in PNAS, examined sulphur and molybdenum isotope signatures in fossils from southern China. These suggest an association with sulphur-oxidising bacteria, potentially supplying nutrition and helping the animal tolerate toxic, sulphide-rich conditions. This is a geochemical inference, rather than the discovery of preserved bacterial partners. If the interpretation is correct, however, it extends the fossil evidence for animal–microbe symbiosis backwards by roughly 100 million years, as co-author Peter Crockford explains in his account of the research in an article in The Conversation.

Creationists often present such interdependence as evidence of design, as though two organisms benefiting from one another could only be the result of someone planning the arrangement. But this overlooks an obvious question: why would an omniscient designer make an animal dependent on another organism for a useful biochemical function? Why not equip the animal itself with the necessary machinery? A partnership introduces additional requirements: the organisms must encounter one another or maintain their association across generations, exchange useful substances, and sustain conditions in which both can function. Each dependency creates something else that can fail.

There is a qualification here. Giving an animal bacterial capabilities would not necessarily be as simple as inserting a few genes into its genome. Genes operate within cellular systems; useful metabolism also requires appropriate regulation, enzymes, transport mechanisms and chemical conditions. Division of labour between organisms can therefore be highly effective. Nevertheless, these are constraints facing organisms produced by evolution. An allegedly omnipotent designer, able to specify the entire system from the outset, cannot readily be excused by invoking the limitations of inherited cellular machinery. Complexity alone is no evidence of intelligent planning, especially when it includes dependence on a separate organism to supply an essential service.

As I argued in The Unintelligent Designer: Refuting the Intelligent Design Hoax complexity is not the evidence for intelligent design that creationists like to think since the hallmark of good, intelligent design is minimal complexity. Complexity is evidence of evolved systems where suboptimal solutions to problems often need additional layers of complexity to mitigate failures.

Refuting Creationism - The Evolution of Complexity - No Magic Needed

Stomata on a leaf surface

Credit: Emilio Ermini, CC BY 4.0, via Wikimedia Commons

Stomata on a leaf surface.

How plants evolved a molecular switch to cope with heat

Creationists routinely portray complex biochemical pathways as systems that must have been designed as complete working units. Remove one component, they argue, and the system ceases to function; therefore, by the presuppositional false dichotomy that characterises creationism, all the components must have been assembled simultaneously by an intelligent designer.

Evolution does not work by assembling entirely new systems from nothing, however. It modifies what is already present. Existing proteins acquire new interactions, mutations alter their stability or activity, and old signalling pathways are recruited for additional purposes. A comparatively small change can connect existing components and produce a new, environmentally responsive function.

An elegant example has now been described by Shao-Li Yang and colleagues from VIB, Ghent University, KU Leuven and collaborating institutions. Their study, published in Nature Plants, identifies a molecular pathway that helps Arabidopsis thaliana cool its leaves during heat stress. It also shows how evolution produced the regulatory switch by altering the electrical charge at a particular position in an existing protein.

Plants cannot escape into the shade when conditions become dangerously hot. One of their principal cooling mechanisms is transpiration: stomata—microscopic pores in the leaf surface—open, allowing water to evaporate and remove heat. This resembles sweating in animals, although excessive stomatal opening also risks dehydration. Plants must therefore regulate the process rather than simply leave their stomata permanently open.

The newly discovered pathway centres on UBP24, a protein belonging to a family of enzymes known as deubiquitylases. Ubiquitin molecules attached to a protein can help to determine its location, activity or destruction; deubiquitylases remove those molecular tags. Under high-temperature conditions, B4 RAF kinases activate another kinase, OPEN STOMATA 1, or OST1. OST1 then attaches a phosphate group to the amino acid serine at position 360 in UBP24.

Refuting Creationism - How Our Cells Communicate Was Inherited From Our Bacterial Ancestors

Ancient Calcium Signaling in Cyanobacterial Cells

AI-generated image (ChatGPT 5.6 Sol)

Even ancient bacteria possessed intercellular communication structures like humans today | CMFI News

The human body is not an organism assembled from newly invented components according to a unique design. It is the latest product of a continuous evolutionary history in which old molecules, old regulatory systems and old cellular capabilities have repeatedly been modified and recruited for new purposes.

Even something as fundamental to our existence as communication between neighbouring cells has roots extending far back into the microbial world.

Our tissues depend upon cells exchanging ions, metabolites and signals through specialised connections. In animals, structures known as gap junctions form channels between adjacent cells, allowing them to coordinate their activity. They are essential, for example, to the synchronised contraction of heart muscle. Calcium ions also serve as important intracellular signals controlling an enormous range of cellular processes.

It might be tempting to regard such coordinated communication as an innovation requiring the complexity of animals or, at the very least, nucleated eukaryotic cells. However, an international research team has shown that a strikingly similar functional principle operates in filament-forming cyanobacteria—organisms belonging to an ancient bacterial lineage.

As the researchers report in The EMBO Journal, the cyanobacterium Nostoc sp. PCC 7120 forms long filaments in which neighbouring cells are linked by structures called septal junctions. These pass through arrays of tiny pores in the peptidoglycan partitions between cells, permitting metabolites and signalling molecules to move along the filament.

Creationism Refuted - Eurasian Homo sapiens Stopped Eating Insects - Thousands Of Years Before 'Creation Week'

Insects in Chang Moi, Mueang Chiang Mai District, Chiang Mai, Thailand.

Credit: mohigan. Licence: CC BY-SA 3.0, via Wikimedia Commons.

European Homo sapiens ate fewer insects than Neanderthals and tropical populations - Institut de Biologia Evolutiva - CSIC UPF (UPF)

Humans are strange creatures. While we recoil at the thought of tucking into a dish of sautéed maggots, fried grasshoppers or other insects, we happily eat their close arthropod relatives, crabs, lobsters and prawns, and yet the evidence is that this has only been so for Northern Eurasians for about the last 9,000 year.

People are also strange in another way: despite all the evidence to the contrary and with no supporting evidence at all, there are people who believe the whole of history can be compressed into a few thousand years and that animals can be created by magic without ancestors.

For biblical literalists, every human who has ever lived must be squeezed into the few thousand years since the supposed creation of the first couple. Yet evidence preserved in something as commonplace as calcified plaque on ancient teeth tells a very different story: one of several human lineages, changing diets, inherited genetic variation and adaptation to contrasting environments over tens of thousands of years.

In a paper published in Science Advances, Manuel Piñero and Pablo Librado of the Institute of Evolutionary Biology in Barcelona combined two independent sources of evidence to investigate the history of human insect-eating, or entomophagy. They searched ancient dental calculus for insect DNA and examined genetic variants affecting our ability to digest chitin—the tough polysaccharide forming much of an insect’s exoskeleton.

Refuting Creationism - Now It's A Transitional Early Insect - From 324 Million Years Before 'Creation Week'

Palaeoecological reconstruction of the Carboniferous stem-insect Chosha praecursor

From: Tihelka, E., Vásquez, C., Engel, M.S. et al (32026)

Amphibious stem-insect rewrites the evolutionary history of insect terrestrialization---- Nanjing Institute of Geology and Palaeontology Chinese Academy of Sciences

A favourite creationist debating tactic is to point to a gap in the fossil record and pretend that the absence of a known transitional form is evidence that no transition occurred. When a suitable fossil is eventually found, the manoeuvre simply creates two smaller gaps on either side of it—or the fossil is arbitrarily declared to be “fully formed” and therefore not transitional. A simple trick which exposes the ignorance and disingenuity of creationism, is to ask them to describe exactly what they would expect a transition fossil to look like. They tend to abruptly break off the debate, because to answer it would violate two unwritten rules of creationism - never consider being wrong and never state what evidence would cause you to change your mind in case it's produced.

This 'god of the gaps' rhetorical game depends upon treating an inevitably incomplete geological record as though it ought to contain a specimen from every generation of every evolving lineage - something that if it were true, would be hard for science to explain, given what we know of the circumstances in which fossils are formed, which actually predicts that the record will be discontinuous.

The early history of insects has offered particularly fertile ground for this tactic. Molecular-clock studies indicate that hexapods diverged from aquatic crustacean relatives hundreds of millions of years ago, yet their small, delicate bodies were poorly suited to fossilisation, especially in the environments through which they were making the transition onto land. Consequently, there has been a conspicuous interval—the so-called “hexapod gap”—between the earliest evidence of hexapods and the abundance of unmistakable insects in later Carboniferous rocks.

Now, an international team led by Erik Tihelka and Chenyang Cai has described a remarkable fossil that helps to narrow that gap while illustrating how the familiar insect body plan was assembled. The approximately 324-million-year-old animal, named Chosha praecursor, came from the Late Mississippian Tesnus Formation of western Texas. Collected in 1985 and long misidentified as a juvenile crustacean, it remained in a museum collection until examination under cross-polarised light revealed anatomical details that had previously been almost invisible. The findings are reported in Nature.

Creationism Refuted - How The Grand Canyon Was Formed - No Magic Flood Involved

Grand Canyon’s oldest and deepest rocks were unearthed by massive cliff across ancient USA.

Lost mega-escarpment across ancient USA may explain Grand Canyon missing billion years

Creationists sometimes point to the Great Unconformity in the Grand Canyon as evidence of Noah’s mythical global flood. But an unconformity is not a layer deposited by a flood. It is a surface representing an interval during which older rocks were exposed, eroded and sometimes deformed before younger sediments were laid on top of them. What is “missing” is not evidence; it is rock that either was never deposited or was subsequently removed, with the surviving rocks preserving evidence of what happened in the intervening time.

Creationists attempts to fit the Grand Canyon into their Biblical flood myth range from the sublime to the ridiculous, none of them in the least plausible and designed to appeal to the parochial ignorance that typifies American creationism. Their conclusion is always sacred and immune to contradiction. Facts are accepted or rejected based on whether they support the conclusion or not. Science, by contrast, starts with a neutral view, collects evidence, then takes a view that accounts for that evidence, as always in science, the facts are neutral and the conclusion provisional, contingent on the discovery of more evidence.

At parts of the Grand Canyon, Cambrian sedimentary rocks rest upon much older Precambrian rocks, leaving more than a billion years of geological history unrepresented by sedimentary strata at that particular location. Far from supporting the idea that the canyon’s rocks were deposited during a single year-long catastrophe, the contact records a succession of events involving sedimentation, burial, tectonic disturbance, uplift, prolonged exposure, erosion and renewed deposition.

A new study published open access in the journal Geology now proposes a mechanism that may explain much of the extraordinary erosion responsible for this gap in the south-western United States. Thomas M. Gernon of the University of Southampton and colleagues have reconstructed a continent-scale escarpment that may have developed along the western margin of Laurentia—the ancient continental core of North America—as the supercontinent Rodinia began breaking apart approximately 800–750 million years ago.

Refuting Creationism - Why Sex Evolved

Recombination by sexual reproduction drives adaptive diversity in yeast

AI-generated image (ChatGPT 5.6 Sol)

The why behind sex — Harvard Gazette

For creationists, who typically know little or nothing about evolution and so have no understanding that it is a process that takes place in a population, not an event that happens to individuals, sexual reproduction is a fertile source of disinformation and misunderstanding with which to attack the Theory of Evolution.

For instance, they frequently argue that the probability of the 'first man' and 'first woman' evolving together is so highly unlikely that their myth of the spontaneous creation out of dirt of a man and the cloning of a woman by magic is a far more rational alternative explanation. The science is attacked because when they try to force fit their childish myth of every species having a single ancestral male and female couple into the science of evolution, it doesn't fit well. The possibility of the myth being wrong must never be contemplated, because that would risk having to change their mind.

However, science works by addressing questions, not by throwing stones at infantile straw-man parodies of alternative ideas and declaring victory by default.

For science, sexual reproduction presents evolutionary biology with a different long-standing puzzle. An asexual organism can pass on its entire genome without finding a mate, competing for one or investing energy in courtship. In species with separate sexes, there is also the familiar “twofold cost of males”: only females produce offspring, whereas every member of an asexual population can potentially reproduce.

All else being equal, an asexual lineage should therefore increase more quickly than a sexual one, and indeed there are a few examples of where this is true - a single female vine weevil can quickly populate a window box or plant pot with devastating consequences for the owner as I have found to my cost; a single marbled crayfish can rapidly spread through a new river system, out-competing any native species.

Yet sexual reproduction is widespread among eukaryotes and has persisted for hundreds of millions of years. This does not imply that evolution requires foresight or that sex was introduced by a designer for some future purpose. It means that, under many circumstances, the descendants of organisms that exchange and recombine genetic material must acquire advantages sufficient to offset the immediate costs.

One important advantage is that sex reshuffles the genome. In an asexual lineage, genes are inherited together as a largely indivisible package. A beneficial mutation can therefore carry neighbouring neutral or mildly harmful mutations with it as it spreads through a population—a process known as genetic hitchhiking. Sexual reproduction and recombination can break up these associations, separating advantageous mutations from some of the damaging evolutionary baggage accompanying them.

Creationism Refuted - The Simple Mutation That Made Grasses So Successful - 100 Million Years Before 'Creation Week'

Joinvillea ascendans, a close relative of grass plants. Used in the Study

Photo: Sarah Friedrich.

Maeda and his collaborators sequenced the slow-growing Joinvillea ascendans plant, a close relative of grasses, to compare genomes and learn what makes grass plants unique.

Photo: Sarah Friedrich.

Molecular “bypasses” improve grass plants’ synthesis of lignin and starch, laying the early groundwork for evolutionary success – Department of Biology – UW–Madison

Creationists routinely claim that mutations can only damage genetic “information” and can never produce anything genuinely new. The claim depends partly upon leaving information conveniently undefined and partly upon ignoring the many well-understood processes by which genomes acquire new functions. Gene duplication, mutation and natural selection can preserve an existing function while a spare copy accumulates changes, sometimes enabling it to perform an additional task or participate in a new biochemical pathway.

A new study published in Science provides an unusually clear example. Rather than merely showing that related organisms possess different enzymes, Yuri Takeda-Kimura and colleagues reconstructed how two important metabolic innovations arose during the ancestry of grasses: additional routes for producing starch and lignin. They did this by comparing the genomes of grasses with those of several of their closest non-grass relatives, including Joinvillea, Ecdeiocolea, Pharus and Typha.

Refuting Creationism - Observed Evolution Of Live Birth in the European Common Lizard

European common lizard, Zootoca vivipara

Image credit: Meredith Kimble

European common lizard, Zootoca vivipara

By Ocrdu - Own work, CC BY-SA 4.0, Link

University of Glasgow - University news - Scientists uncover the evolutionary process behind live birth in lizards

Live birth is not a simple characteristic that could be produced by switching a single gene on or off. Retaining embryos inside the mother until they are sufficiently developed to survive requires coordinated changes in gestation length, uterine physiology, eggshell formation, gas exchange, nutrient transfer, hormonal control and the maternal immune response. To creationists, this is just the sort of complex biological system that must supposedly have appeared complete and fully functional in a single act of creation.

But that is not what the genomes of living animals show.

In a study recently published in Current Biology, an international team led by Dr Hongxin Xie of the University of Glasgow has reconstructed how live birth evolved in the Eurasian common lizard, Zootoca vivipara. The transition did not depend upon one miraculous genetic leap, or even upon one or two mutations of exceptionally large effect. It arose through natural selection acting upon numerous genetic changes distributed across the genome and accumulated over an extended period.

Refuting Creationism - How Death Stalked South America In The Form Of Giant Crocodylians - Over 10 Million Years Before 'Creation Week'

[caption]

[credit]

Reconstruction of Purussarus neivensis attacking Pericotoxodon platignathus.

Image: Miguel Hernandez.

Giant crocodylians dominated the food chain in Miocene South America | University of Helsinki.

If the Young-Earth creationist claim that there was no death, suffering or predation before Eve’s supposed ‘sin’ were true, four fossil specimens preserved in museum collections in Colombia should not exist. They are the remains of large herbivorous mammals bearing punctures and other damage attributed to the teeth of a giant crocodylian—and they are between approximately 10.5 and 16 million years old.

In other words, these fossils are not merely the remains of animals that lived and died millions of years before there were humans to commit any biblical ‘sin’. They preserve physical evidence of animals attacking—or, at the very least, feeding upon—other animals in a functioning predator–prey ecosystem more than a thousand times older than the entire universe imagined by Young-Earth creationists.

The evidence is described by Oscar E. Wilson of the University of Helsinki and Jorge W. Moreno-Bernal in a paper recently published in the Journal of Vertebrate Paleontology. The researchers examined four specimens belonging to three species of large, now-extinct South American ungulates from the celebrated La Venta fossil assemblage of Colombia: the toxodontid Pericotoxodon platignathus and the astrapotheres Xenastrapotherium kraglievichi and Granastrapotherium snorki.

The skulls and jaws bear puncture marks and, in some cases, substantial deformation caused by a powerful bite. From the size and shape of the marks, together with the force apparently needed to produce the damage, Wilson and Moreno-Bernal identify the most likely culprit as Purussaurus neivensis, an enormous relative of modern caimans that may have reached about seven metres in length and weighed approximately 1,800 kilograms.

Middle Miocene South America contained an ecosystem unlike anything living today. The continent’s long geographical isolation had allowed native mammals—including toxodontids, astrapotheres, ground sloths and glyptodonts—to diversify independently. Around the immense tropical wetlands lived giant snakes, flightless predatory ‘terror birds’, terrestrial crocodyliforms and several kinds of aquatic crocodylian. Because large mammalian carnivores were comparatively scarce, reptiles such as Purussaurus occupied the major apex-predator niches.

Earlier studies had inferred this ecological role from the animals’ size, anatomy and the composition of the La Venta fauna. The newly reported bite marks provide direct physical evidence that giant crocodylians interacted with—and probably preyed upon—some of the ecosystem’s largest herbivorous mammals. Purussaurus may therefore have helped to regulate herbivore populations, much as large predators influence prey populations in modern ecosystems.

For creationists, the problem could hardly be clearer. These animals lived, competed, killed, fed, reproduced and became extinct millions of years before any known hominin existed, let alone the mythical couple blamed in Genesis for introducing death into the world. Even if an individual bite mark resulted from scavenging rather than an actual attack, that alternative still requires a dead animal, a flesh-eating crocodylian and an established ecological system based partly upon the consumption of carcasses. It offers no refuge for the claim that the pre-Fall world was free from death and carnivory.

Refuting Creationism - How Humans Evolved, Migrated And Interacted In The Nile Valley - 34,000 Years Before Creation Week'

The history of Homo sapiens in Africa between 44,000 and 3,000 years ago was one of isolation, migration, interaction and replacement a shown by characteristic inner ear labyrinth morphologies.

AI-generated image (ChatGPT 5.6 Sol)

Research paper: Bony labyrinth morphology reveals deep population history and isolation among Homo sapiens in prehistoric northeastern Africa (44–3 ka) | Nature Communications

An international team of biological anthropologists has found a novel way to reconstruct tens of thousands of years of human population history in north-eastern Africa: by examining tiny variations in the shape of the bony cavities that once contained people’s inner ears. It's not good news for creationists so it'll be just one more thing for them to ignore one way or another.

The researchers, led by Nicolas Martin and Isabelle Crevecoeur of the PACEA laboratory at the University of Bordeaux and the French National Centre for Scientific Research (CNRS), have published their findings in Nature Communications.

The bony labyrinth is a complex system of cavities within the temporal bone of the skull. It surrounds the cochlea, involved in hearing, and the semicircular canals, involved in balance. Although its shape varies subtly between individuals and populations, much of that variation reflects inherited ancestry. High-resolution micro-CT scanning allows the labyrinth to be reconstructed and measured in three dimensions without damaging the remains.

This makes it especially valuable in regions such as north-eastern Africa, where heat and other environmental conditions have frequently destroyed ancient DNA. When molecular evidence is unavailable, the shape of the inner ear can preserve an anatomical record of biological relationships between ancient populations.

Martin and his colleagues analysed 194 bony labyrinths belonging to 148 individuals. Their sample included people who lived between approximately 44,000 and 3,000 years ago in the Middle Nile Valley, the Horn of Africa and Central Africa, together with comparative specimens from elsewhere in Africa, Europe and the Levant. The researchers applied three different methods of shape analysis, all of which produced the same broad patterns.

Those patterns reveal a long and complicated history of regional continuity, isolation, migration, interaction and partial population replacement. Late Pleistocene and Early Holocene hunter-fisher-foragers from the Middle Nile Valley showed broad morphological similarities both to one another and to still earlier African Homo sapiens. This is consistent with deep regional ancestry and substantial biological continuity extending across many thousands of years.

That continuity was disrupted during the Neolithic transition. Beginning about 8,000 years ago, food-producing populations with distinctly different inner-ear morphologies appeared in the Middle Nile Valley, supporting the conclusion that pastoralism and agriculture arrived with migrating people rather than being adopted solely by the region’s existing foragers.

This was not necessarily a simple or complete replacement. Individuals retaining affinities with the earlier foragers survived for several millennia in areas bordering the Nile Valley, while some remains display combinations of characteristics consistent with limited interaction or admixture between the old and new populations. Samples from the Horn of Africa and Central Africa also showed considerable morphological diversity, indicating population substructure and differing regional demographic histories.

These results independently support earlier research by Martin and many of the same colleagues, which detected a similar Neolithic population discontinuity from the internal structure of ancient teeth. A CNRS account of that earlier study explains how enamel–dentine junctions revealed population replacement and continuing interaction along the Nile and its Saharan margins. Now two independent anatomical systems—teeth and inner ears—have produced compatible reconstructions of the region’s population history.

This presents creationists with the familiar problem of evidence that should not exist if their mythology were true. According to the young-Earth version of the biblical story, the entire human population was reduced to Noah’s family only a little over 4,000 years ago. Every population on Earth must therefore have descended from that tiny group after an extraordinarily rapid dispersal from somewhere in the Middle East.

Unintelligent Design - The Perpetual Evolutionary Arms Race In Your Gut

Certain bacteriophages found in the human gut have mutation hotspots scattered throughout their genomes that help them modify key defense genes, researchers report.

Credit: Sundharraman Subramanian and Alaina Pabbathi
Cryo-EM Core Facility
Michigan State University

Mutation hotspots help 'friendly' viruses outmaneuver the bacteria in your gut

One of the more persistent creationist falsehoods is the claim that mutations can only damage or destroy genetic information and can therefore provide none of the variation needed for evolution. The claim is usually protected from contrary evidence by leaving “information” conveniently undefined or by dismissing every beneficial mutation as merely a “loss of function”.

However, a new study by Jasper B. Gomez, Jeffrey E. Barrick and Christopher M. Waters of Michigan State University provides an especially clear demonstration of mutation generating heritable variation on which natural selection can act. Their findings were published in Nature Microbiology.

The researchers found that the genomes of the bacteriophages T2 and T4 — viruses that infect bacteria such as Escherichia coli — contain regions of repetitive DNA called contingency loci. These are mutational hotspots in which the DNA-copying machinery is particularly liable to slip while copying a run of repeated bases. It may insert or omit one of the repeats, changing the way the remainder of a gene is read and consequently altering the protein it produces.

Such replication errors occur in these regions thousands of times more frequently than mutations across the rest of the phage genome. Far from producing a population of genetically identical copies, therefore, phage replication continually generates a mixture of variants with different inherited characteristics.

The discovery arose from experiments involving a bacterial antiviral system called TgvAB, normally found in Vibrio cholerae, the bacterium that causes cholera. The researchers transferred the genes for this defence system into laboratory E. coli and exposed the bacteria to T2 phages. Although the defence initially restricted the phages, the viral population began overcoming it within hours.

Refuting Creationism - Rapid Evolution In Andean Potato Eaters

Andean Quechua speaker

By Cacophony - Own work, CC BY-SA 4.0, Link

Quechua woman and child in the Sacred Valley

By quinet - Mother and Child, CC BY 2.0, Link

Indigenous Andeans have a digestive superpower; researchers think it may be linked to potatoes  | UCLA

The results of a study co-led by researchers at UCLA and the University at Buffalo, published in Nature Communications in May 2026, provide another straightforward counterexample to the creationist claim that natural processes cannot add genetic material to a genome without the intervention of their particular magic creator. They also show how relatively recent human evolution can be detected, reconstructed and quantified from the DNA of living populations.

What cannot be observed is the intelligently designed caricature of evolution that creationists are conditioned to mistake for the scientific theory: a single dramatic event in which one species suddenly transforms into an unrelated form. There is no plausible biological mechanism for such a transformation, which is why evolutionary biologists have never proposed one. Biological evolution is a change in the frequency of heritable variants within a population over successive generations; larger differences, including those associated with speciation, accumulate through many such changes.

Young-Earth creationists are nevertheless prepared to invoke evolution at an absurdly accelerated rate when their mythology requires it. To squeeze the present diversity of life into the few millennia supposedly available after their genocidal global flood, a small number of vaguely defined ancestral “kinds” would have needed to diversify into hundreds of thousands of beetle species and countless other forms almost overnight. Yet the same creationists baulk at evidence that human populations have undergone much more modest evolutionary changes over thousands of years.

The new research concerns AMY1, the salivary amylase gene. Salivary amylase begins the digestion of starch in the mouth, and people differ considerably in the number of AMY1 copies they carry. An early duplication of the gene occurred in the hominin lineage at least 800,000 years ago, after which repeated duplications, deletions and inversions generated numerous structural variants containing different numbers of copies. These are mutations that change the amount and arrangement of genetic material in the genome — precisely the sort of naturally arising variation that creationists insist cannot occur.

Crucially, cultivating potatoes did not cause the ancestors of Indigenous Andeans to acquire additional AMY1 copies because they needed them. High-copy variants were already present in the population. When potatoes and other starch-rich crops became dietary staples, people carrying more copies probably produced more salivary amylase and obtained a reproductive or survival advantage. Natural selection then increased the frequency of those pre-existing variants — evolution acting as a filter, not as a designer working towards a predetermined goal.

The researchers analysed AMY1 copy numbers in 3,723 people representing 85 populations. Indigenous Peruvian Andeans had among the highest numbers found, with the Quechua participants carrying a median of ten copies, compared with six among the closely related Maya comparison group and seven across the worldwide sample. The genetic evidence indicates that a high-copy haplotype increased in frequency among Andeans from about 2 per cent to approximately 45 per cent after around 10,000 years ago, coinciding with permanent settlement of the high Andes and the domestication of potatoes between about 10,000 and 6,000 years ago.