F Rosa Rubicondior: July 2013

Monday 29 July 2013

Religion to Disappear By 2038

Nigel Barber: Atheism to Defeat Religion By 2038

In a recent book, "Why atheism will replace religion: The triumph of earthly pleasures over pie in the sky", Nigel Barber makes a very strong case for thinking atheism will have replaced religion across the world as a whole by 2038, in other words within the next generation.

Accepting the evidence showing a very strong correlation between the wealth of a country, measured by per capita Gross Domestic Product (GDP) - a measure of average wealth generation - he arrives at this by taking two measures of Atheism:
  1. The projected date by which the average country will reach the 2004 GDP of the nine most godless countries - Belgium, Czech Republic, Denmark, France, Germany, Japan, Netherlands, Sweden and the United Kingdom (proud to see the UK up there!) who transitioned to Atheism in that year. The International Monetary Fund gives an average annual increase in GDP of 3.33%.
  2. Relative religiosity - that is, how important people think religion is in their lives. When they regard it as unimportant they become functionally atheist - in other words, they behave like perfectly normal atheists do - and a country in which more than 50% of the population regard religion as unimportant has effectively become a secular society. On this measure, taking Gallop Organization data, the most godless countries are Spain, South Korea, Canada, Switzerland, Uruguay, Germany and France. This has been increasing at a rate of 1% per annum.
Incidentally, that figure of 1% is exactly the figure reported for the USA between 2004 and 2013 by YouGov poll a few days ago, although the rate of increase appears to be increasing there, being 1.2% for the five years from 2008 to 2013.

Twitter Under Attack for Permitting Abuse

BBC News - Twitter 'report abuse' button calls after rape threats

BBC News - Twitter abuse case leads to arrest

It seems that Twitter may be becoming submerged in complaints of harassment and abuse, and of permitting this to continue as it becomes something of a safe haven for people with acute personality disorder to feel powerful in the safety of their bedroom.

At the moment the only weapon normal users have appears to be the ability to spam block offending individuals, which appears to trigger an automated algorithm not requiring human intervention, resulting in the account being suspended. In effect, policing Twitter is in the hands of the Twitter community whilst Twitter either can't, or won't defend their clients against inadequate and dysfunctional individuals whose only achievement in life is to get some attention, presumably working on the assumption that if they can tell themselves they've made someone elses life worse, this will somehow make theirs better.

The inadequacy of this method can be seen by the frequency with which it is used by those wishing to suppress free speech because they know their case is untenable. This is most often religious groups who are well aware that their public religiosity is merely a cover for otherwise unacceptable attitudes and actions and so will go to extraordinary lengths to prevent that being exposed.

Now combine this with, for example, a psychotic personality disorder in someone who has been frustrated in his ambition to gain trusted access to vulnerable people disguised as a priest, and you have a potent mixture for abuse which Twitter almost seems at times designed to facilitate.

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Sunday 28 July 2013

Science Has Life After Death

Stephen Hawking tells how doctors offered to turn off life support in 1985 | Science | guardian.co.uk

The news that doctors in Switzerland asked Stephen Hawking's then wife Jane to consider allowing them to turn off his life support when he was seriously ill with pneumonia in 1985, before he had completed his most famous book, A Brief History of Time set me thinking.

Apart from depriving us of one of the best-known popular physics books of all time and one of the greatest theoretical physicists of all time, what else would Stephen Hawking's death have cost humanity?

Saturday 27 July 2013

You Really Won't Want To Miss This

As most of you will know by now my Twitter account has been suspended. The reason why is shown here.

I've used a screen capture because otherwise Manuel will accuse me of making up emails like he does. As you can see, it had nothing to do with him, in any of his many guises. (See Manny's Many Twitter Accounts.) In fact, I appear to have triggered some algorithm, probably because I was replying to too many Creationist tweets in @TakeThatDarwin's timeline. They were just too tempting...

Sorry it's a little indistinct but the relevant passage reads: Your account was suspended because it was found to be violating the Twitter Rules (https://twitter.com/rules), specifically those rules around interacting with others by sending unsolicited or duplicate @replies or mentions. Double click to see it full size.

Winning With Science

Belief in evolution up since 2004

The recent dramatic advance in the understanding of science and the corresponding rejection of primitive superstitions as an explanation for life on Earth across America was illustrated by a stunning YouGov poll published a few days ago. The last nine years between 2004 and 2013 when the poll was conducted has seen acceptance of the science of undirected, unguided Darwinian evolution as the explanation for human beings rise from just 13% to 21% - an increase of almost 1% per annum.

And it's even more of a shock for Creationists when we look at those figures more closely. Between 2004 and 2008 the increase was 0.5% per annum but this more than doubled to 1.2% per annum between 2008 and 2013. The rate of increase has doubled in just five years. This is beginning to look like the beginnings of an exponential growth phase where the rate of increase also increases steadily, just as we saw, and are still seeing in Europe.

Friday 26 July 2013

Religiously Hypocritical.

Justin Welby, Archbishop of Canterbury
BBC News - Archbishop of Canterbury 'furious over' Church investment in Wonga

This made me chuckle. The background to the story is that the new Archbishop of Canterbury and pastoral head of the world-wide Anglican Community, Justin Welby, had said that he has told the head of Wonga, a notorious loan-sharking company , "we're not in the business of trying to legislate you out of existence; we're trying to compete you out of existence".

Wonga specialises in luring poor people into spiraling debt then hitting them with extortionate penalty payments they can't possibly afford, eventually sending in bailiffs to seize their possessions, like a blood-sucking parasite bleeding its victim to death with all the morality of the financial marketplace.

Thursday 25 July 2013

Bacteria Are Winning With Evolution

Antibiotic resistance: The last resort : Nature News & Comment

Evolution is the weapon of choice for bacteria fighting the war on antibiotics.

Except, of course that there is no choice involved and bacteria are not even aware they are fighting a war. All that's happening is that an environment with antibiotics in it has given those few bacteria which have a genetic resistance to antibiotics such a massive advantage that they are quickly replacing the non-resistant form in the population. Bacterial genes are simply doing what they have done since the first self-replicating molecules arose on Earth - they are replicating themselves. The natural environment is sorting out the fittest and allowing them through the natural selection sieve into the next generation.

The above article in yesterday's Nature superbly illustrated evolution in progress. We have created the classical Darwinian model for evolution to be inevitable:
  1. Replication.
  2. Variability.
  3. Selection.
[A]ntibiotic resistance should be added to the UK government’s list of threats to national security, alongside pandemic influenza and terrorism.

Previously, before we started to use antibiotics, any chance variation in the relevant genes might have had no meaning whatsoever, and may even have disadvantaged the carrier. The environmental change we created has changed the meaning of the information carried by the genome. The amount of information hasn't changed, only it's meaning.

As Maryn McKenna points out, we are now reaching the point where bacteria are evolving resistance to one of the last drugs on the shelf. Unless we can invent antibiotics more quickly we will eventually lose this arms race and a purely natural undirected and aimless process, will have beaten everything that human science can muster against it. Such is the power and inevitability of evolution by natural selection. So far, we have not managed to exterminate a single known bacterial species. Even tuberculosis, once having looked to be on it's way out, is making a comeback having overcome our antibiotics of choice.

Of course, we have exterminated smallpox and the cattle disease rinderpest in the wild and have come close to exterminating poliomyelitis, but these are viruses not bacteria and are not touched by antibiotics. The only non-viral organism we have had any real impact on has been the Plasmodium species which cause malaria and they are now showing signs of a similar resistance to antimalarial drugs as are the mosquito vectors which transmit them to us to insecticides.

We have a very serious problem, and we need to sound an alarm.

Thomas Frieden, director of the US Centers for Disease Control and Prevention (CDC) in Atlanta, Georgia, USA.
Many protozoans such as bacteria have a very short generation time - as low as 10-20 minutes in favourable conditions - so they represent a speeded up version of evolution - humans are several orders of magnitude slower at about 25 years. Bacteria also have a much smaller genome so they show us much more clearly what can be produced in a few generations by environmental change and under intense selection pressure such as a new antibiotic. A multicellular organism, with its much slower generation time would be expected to evolve much more slowly but, with a larger genome, they are likely to be evolving with several gene-lines in parallel.

Bacteria sharing genetic information
Bacteria don't reproduce sexually, of course, which on first consideration might be thought to reduce the scope for evolution which sexually reproducing organisms get from frequent shuffling and mixing of the genomes from two individuals, however, bacteria do exchange genetic material in the form of plasmids by which they can pass antibiotic resistence to other bacteria and even to another species - a process known as horizontal gene transfer. This appears to give bacteria at least the same degree of 'evolvability', in other words, the ability to adapt quickly to environmental change, as does sexual reproduction in more complex organisms.

So here we have a wonderful example of evolution in progress and an illustration of how an arms race can be won not by planning and intelligent design but by a mindless, undirected, yet inexorable and inevitable process of evolution driven by natural selection which looks for all the world to an uninformed observer like an intelligent one.

Now, those few Creationists who didn't stop reading when I opened with the word 'evolution' and who have made it to this point without becoming too afraid to continue reading may still be telling themselves that an invisible magical friend who loves them above all else is directing things, the way the Discovery Institute likes to tell them, have to answer a couple of question:
  1. Why would a benevolent intelligent designer be ensuring our defense against killer bacteria is abolished by making them resistant to it, unless it is on their side and wants to make us sick and die?
  2. Why has it made it look like a natural process, which can be fully explained without the need for magic or gods, or a designer of any description?
If you think you can answer these, you are free to avail yourself of the comment section here to do so.

If you can't, you might like to explain why you still like to believe an imaginary friend is directing things for your benefit.

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Wednesday 24 July 2013

A Persecuted Minority

Lord Carey, former Archbishop of Canterbury and
unelected member of the bicameral UK Parliament's Upper Chamber
As the Humanist march continues, in Europe at least, we are seeing case law being made which establishes that even Christians now have to obey the law. Indeed, this is a common cause of their whinging.

I've noted before how hypocritical Christians like former Archbishop of Canterbury and pastoral head of the Anglican Communion, Lord Carey, keep whining about Christians being a persecuted minority. Carey, in particular is often heard complaining when Christians have lost another court case brought against them for denying goods and services to people, or discriminating against, bullying or committing other hate crimes againt people on the grounds that their religion requires them to.

Carey sees it as a basic human right for Christians to deny basic human rights to non-Christians and regards it as persecution to insist that they comply with the law of the land, which, as an unelected member of the UK parliament he has the right to influence the framing of.

It's not just in the UK where Christians have this inflated sense of entitlement and regard any denial of privilege as a denial of their rights. We recently had an outstanding example from the USA where Christians were complaining that they were having to remain 'in the closet' about their homophobia and not being able to keep homosexuals in the closet where they belong.

Yes! It's a baby!
However, one small event which, if you were watching the BBC News a couple of days ago, seemed to happen on a day when, by great good fortune, nothing else happened anywhere in the world puts this persistent whining into context. The wife of the second in line to the hereditary title of Head of State of the UK (and several other Commonwealth countries, including Canada, Australia and New Zealand) and titular head of the World-wide Anglican Christian Church, produced an offspring.

This child, if it, and the monarchy, survives that long, will succeed to the post currently held by his great grandmother. In effect, unless the law changes, my grandchildren's children's, and even their grandchildren's ruler has already been chosen, as has the head of whatever is left of the Anglican church. He need do nothing at all to earn that post for which there is no formal job description and no basic standards against which performance can be measured. Of course, given that time-scale and the likelihood of Scotland leaving the Union with possibly Wales following suit, we don't know what he will be king of.

In the UK, the monarchy symbolised both the class system based on hereditary privilege, and how closely interwoven the Anglican Church has been in this system since Tudor times. The right of certain Anglican bishops to sit in the House of Lords and the tradition of some retired ones continuing so to do is a reflection of the privilege which Anglicans have traditionally had in Britain.

One wonders what Prince George has inherited in his DNA which entitles him to this future power but, unless the law is changed under pressure from Humanists, one thing we can be sure of is that one of Lord Carey's 'persecuted' Christians will hold the post of Head of State at least of England, quite possibly into the twenty-second century, and will need to have done nothing at all to deserve it.

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Friday 19 July 2013

Battle of the Chimpanzee Sexes

Chimps have experimented with sex more than humans - life - 18 July 2013 - New Scientist

Science is moving a little close to working out what our common ape/human ancestors got up to in the bedroom, or whatever their forest equivalent was. And in doing so have discovered a fascinating example of a battle of the sexes in the common chimpanzee (Pan troglodytes)

Unlike the other great apes, us included, male chimpanzees use the barrier method of contraception, not to prevent their sperm from finding the female's ovum, mind you, but to prevent those of rival males finding it. The sperm of the common chimpanzee coagulates and forms a plug in the vagina because it contains a coagulating enzyme. The normal method of choosing a mate for the common chimpanzee is to simply offer herself to any available male when she is oestrus. In this way she ensures that she finds at least one fertile and effective male to father her offspring.

With gorillas, the alpha male is the mate of choice for the females, not that she has much choice because he vigorously enforces his right over other males, so is the only male available. She can have any male she wants so long as it's the silver-backed male. This method ensures the female's offspring have the strongest, fittest father. Male gorilla genes have ensured they produce the most descendents by evolving this particular strategy which works because of the slow reproductive cycle of the gorilla, even though it leaves many males redundant. So long as the females reproduce at close to maximum capacity, it matters not to male genes if they all come from the alpha male and leave the other males redundant.

With the common chimpanzee however, there is no particular alpha male so far as the females are concerned. How then do male chimpanzee genes ensure they maximise their chance of success? With very great difficulty, unless they use subterfuge. So, at some time in the past an enzyme which causes the sperm to coagulate in the vagina, so acting as a barrier to other male's sperms, gave those males who carried it an enormous advantage because, if they were selected first, they had a much better chance of success. These genes would have quickly spread throughout the population.

This illustrates perfectly how an arms race (in this case between a female wanting a spread bet and a male wanting to exclude competitors) can lead to no particular advantage to anyone in the long run but mindless, undirected, unplanned and unintelligent evolution ensures it happens anyway.

However, as with many things in evolution, it's not quite that straightforward. Researchers have found that male humans and the other apes all have an enzyme in their sperm which prevents this coagulation occurring. In the common chimp this enzyme is broken, so effectively turning it off. We all have the same gene. Humans have four times as much of this enzyme as chimpanzees do.

Michael Plavcan at the University of Arkansas agrees that the study is consistent with the idea that chimps evolved a unique mating system since their lineage split from ours. "People often forget that chimps, like humans, have evolved from a common ancestor and are not some relict species frozen in time," he says.

Chimps have experimented with sex more than humans, Colin Barras, New Scientist magazine issue 2926, 18 July 2013
What seems to have happened is that an even more remote common ancestor had a similar arms race but that females hit back with a gene to prevent coagulation, which countered that of the male. If this gave them more descendants, this would have come to dominate the genepool. At some point after divergence, the common chimpanzee switched off this gene and a new arms race ensued with the result we see today.

From an evolutionary point of view since this method is absent in all other apes we can be fairly certain that it evolved in the common chimpanzee after they diverged from gorilla and then from us and the bonobo where the female counter enzyme is still active. In the gorilla, male genes have adopted a different strategy in the form of a patriarchal social structure and in humans a more-or-less monogamous relationship, at least for most people most of the time but with cuckolding frequent, and a gorilla-like hareem system in a few, especially for high-caste males.

And this in turn suggests that the chimpanzees have evolved their promiscuous female mating strategy after divergence too.

One intriguing question remains: why hasn't this system evolved in the bonobo, which is notorious promiscuous in it's mating habits, using sex as a social bonding mechanism and for pleasure as well as for reproduction.

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Evolution For Brainy People

Neanderthal. Why did we succeed and not him?
First look into workings of the Neanderthal brain - life - 17 July 2013 - New Scientist

It's beginning to look like our (Homo sapiens) ultimate and apparently quite sudden success over our close cousins the Neanderthals (H. neanderthalensis or maybe H. sapiens neanderthalensis) and the recently-discovered Denisovans who don't seem to have been awarded a scientific name yet, may have been due to changes in a very small number of genes, and maybe whether they were 'switched on' or not.

Incidentally, this same article illustrates how anatomical complexity need not involve increased genetic complexity, as Creationists wrongly claim the evolution theory says. In fact it doesn't even need to involve an increase in information, merely what that information is. I'll expand on this later.

Scientists working for the Hebrew University of Jerusalem and the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany have analysed the epigenomes of Neanderthals and Denisovans and compared them with those of modern humans and have found that there was about a 99% match. However, of those 700 or so which differed, about 200 of these were common to Neanderthals and Denisovans but where theirs were active ours were inactive, and vice versa. Many of these are involved with immunity and metabolism and, when they go wrong, with disease. A very large number seem to be associated with psychiatric and neurological conditions.

Wednesday 17 July 2013

Too Many Transitional Fossils

Homo erectus
The strange ape that's rewriting our family tree - life - 15 July 2013 - New Scientist

Far from there being no transitional fossils as Creationists claim, we now have what's turning out to be too many of them. Rather than the tree of human evolution being a simple one with just a single branch off the African ape limb, it's turning out to be a much richer, more complicated and interesting one with several different hominins co-existing for most of our history. In fact, the last few thousand years, since the last Neanderthals and Denisovans died out as distinct species, have been unusual and maybe unprecedented; we are now the only member of the Homo genus to survive.

Thursday 11 July 2013

How We Know The Bible Was Written By Ignorant People

A stone axe from near Shanghai, eastern China. May show a form of primitive writing.
Photograph: AP
Inscriptions found in Shanghai pre-date 'oldest Chinese language by 1,400 years' | World news | guardian.co.uk

This article in today's Guardian got me thinking about how ridiculous the Bronze Age origins myths in the Bible are and how easy it is to refute them by just looking at the world today.

For example, in Genesis we read about a worldwide flood which only a single family survived. It is inconceivable that the details of this and the names of Noah and his family, the people who saved the world and from whom we are all descended, would have been forgotten in just a few generations.

Sunday 7 July 2013

The Cult of Pope Worship

We spent a few days in Rome last month and took in the obligatory tour of St Peter's Basilica in the Vatican City to see the Michelangelo ceiling in the Sistine Chapel and the murals by Raphael in the Stanze di Raffaello - book in advance on line for speedy entry; the queues are frightening.

Apart from very obviously being a vast, highly organised money-making industry, the thing that struck us most was how central the figure of the Pope is to everything. Every stall (there is one every few yards) selling tourist tat and over-priced strings of coloured beads to the 'faithful' carried a huge assortment of pictures of smiling Popes in various forms of fancy dress, sometimes with humorously phallic headwear, making pious magic gestures with two fingers, or just grinning beatifically.

Most of them were of the current Pope (how quickly they must have got those to the printers and out onto the stalls in such quantities); quite a lot were of his predecessor, Benedict XVI trying hard not to look like a leering paedophile who can't believe he's gotten away with it, and a few were of the Polish Pope, John Paul II. Conspicuous by their absence were photos of John Paul I whose mistaken election is reputed to have been corrected just 33 days later when he was found dead, allegedly by a nun who was visiting his chamber early in the morning.

Outside in St Peters Square, almost the entire area is divided up with crowd-control barriers for the vast numbers of Catholics who descend on the Vatican whenever a planned papal manifestation is announced. A couple we met in our hotel were telling us excitedly how they had queued (no seats are provided) for hours in the shade-free square in temperatures approaching 35-40 degrees and had been 'rewarded' with a brief glimpse of 'His Holiness'. One could only sympathise. Nuns in various costumes, looking for all the world like devout Muslim women in a hijab, only dressed in white, blue or brown, with every hair, ankle and neck well covered lest they arouse uncontrollable passions in men, twitter excitedly like groupies outside the stage door of the latest boy-band, hoping for a glimpse of the Pope - even the hem of a disappearing white cassock or the wave of a hand from a window will induce raptures.

Some even believe the image of John Paul II will cure terminal illness.

What we both noticed particularly was how the proverbial visitor from outer-space would see Catholicism as Pope worship, with the Pope as a living god in just the same way that the Japanese Emperor was to pre-WWII Japanese and the way the Emperor was in the latter days of the Roman Empire. It looks for all the world as though the pre-Christian official Pontifex Maximus, or high priest of all the gods, had been transformed into the Christian Bishop of Rome.

Emperor Augustus 27 BCE - 14 CE,
Pontifex Maximus. The first Pope.
And this, of course, is precisely what did happen. The first Emperor to declare himself both Pontifex Maximus and a god was Augustus. As Pontifex Maximus he was uniquely placed to declare his elevation to the post of God-King to be the revealed will of God.

This explains why the Catholic Church is still rigidly hierarchical with the cult leader being the source of all clerical powers, the source of all religious dogma and the inerrant, infallible mouthpiece of God. To a devout Catholic, the Pope and God are as one. The Pope speaks the mind of God and announces His will. And with theological matters such as the existence of Limbo, and the qualifications for entry into Heaven, the Pope hands down policy to God.

Catholicism is the cult of Pope worship. The Pope is not the heir to an invented 'St Peter', but the heir to Augustus, the Roman God Emperor who died in 14 CE and whose title and role was passed down to the Christianised ruling god-king, the Pope, Papa or Holy Father.

If you want to see the last Roman god, Pontifex Maximus, a relic of a bygone age and the invention of a degenerate ruling class, go and stand for hours in the Roman sun - and remember to take plenty of money with you.

And women! Cover yourself up. God hates having to oggle at your bodies!

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Thursday 4 July 2013

A Sick World

A sick world in gorgeous close-up - health - 26 June 2013 - New Scientist

This stunning image, published in today's New Scientist is by the artist Odra Noel who trained as a doctor. It represents the major health problems in each area of the world.

I wonder how religious people, who attribute illness to their god as some sort of retributive punishment account for it. For that matter, even if they don't subscribe to the divine punishment by a vindictive god idea and just believe that their god created everything for a human-centered purpose, how do they account for their god creating what looks suspiciously like a broad-brush approach to inflicting diseases on mankind, for whatever reason?

Wouldn't you expect a god who cares for each and every one of us and takes a close personal interest in all aspects of our lives, to show a little finesse? Why, for instances, do Americans get the obesity, Europeans get degenerative diseases associated with longevity whilst South-East Asians get diabetes and Greenlanders seem to have a fertility problem?

Could the most vicarious explanation be that gods don't play any population health and that it's a combination of economics, culture, geography, genetics and climate?

You can see more of Odra Noel's work here.

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Wednesday 3 July 2013

Tasteless Rebuff to Intelligent Design

Normal mouse testes. Streaks are healthy sperm tails
Losing the “taste” for sperm | The Scicurious Brain, Scientific American Blog Network

Scientists investigating the sense of taste have discovered something which illustrates nicely something Intelligent Design pseudo-scientists would much rather you weren't aware of.

As reported by Scicurious in Scientific American a couple of days ago, discussing a paper published in PNAS, a team of scientists were researching the sense of taste and found something really quite unexpected and fascinating.

Taste depends on receptors which are composed of several protein subunits which, being proteins, are coded for by specific genes. If one or more of these proteins is defective or absent it can affect the sense of taste, often in very specific ways. Two of these receptor subunits have the scientific names TAS1R3 - which is a component of two different receptors, for sweet and for umami - and GNAT3 which is essential for "basic taste". The researchers had bred mice in which either one or the other of these two subunits were absent and wanted to see what would happen if both were absent in an individual mouse. It turned out to be surprisingly difficult to breed them.

Abnormal mouse testes. No sperm and strange dark blobs
It turned out that male mice with both these subunits missing were sterile. They simply did not have functioning testes and produced no sperm. These proteins are also needed for normal testicular development and sperm production - something which, at first sight would appear to have nothing at all to do with a sense of taste. Clearly, a protein, or rather the gene which codes for it, which evolved for one process has been co-opted for a different use at some point in mammalian evolution.

Now, a serious professional liar for the Discovery Institute, or for one of the many online Creationist book marketing and money-making scam sites, will tell you that structures like taste receptors are 'irreducibly complex', depending on being fully formed for their function with no obvious way in which it could have evolved gradually. So, they will argue, they could not have arisen by a gradual evolutionary process and must have been designed at produced as fully-developed structures.

In the fruit fly Drosophila, the vestigial gene plays a critical role in wing development. In fact, if these flies are homozygous for the recessive form of the vestigial gene (vg), they will develop short wings, and they will be unable to fly as a direct result. Along with regulating wing development, the vg gene is also pleiotropic. Indirectly, the gene changes the number of egg strings in a fly's ovaries, alters the position of bristles on a fly's scutellum, and decreases the length of a fly's life (Caspari, 1952; Miglani, 2002).

Scitable - Pleiotropy: One Gene Can Affect Multiple Traits, Ingrid Lobo, 2008
What they would rather not tell you is that structures can arise fully formed by incorporating pre-existing components which evolved gradually for an entirely unrelated purpose.

Examples of this include the flagellum, which Creationist frauds still cite as an example of irreducible complexity and which could not have evolved gradually, despite the fact that plausible mechanism for its evolution has been described and are widely accepted. The "Type III Secretion System", out of which the so-called proton motor of the flagellum may well have evolved, for example, includes very similar structures which evolved for an entirely different function and which themselves could have evolved gradually.

In fact, there are multiple examples of a single gene affecting multiple traits - the technical term for this is pleiotropy
The phenotypic effects that single genes may impose in multiple systems often give us insight into the biological function of specific genes. Pleiotropic genes can also provide us valuable information regarding the evolution of different genes and gene families, as genes are "co-opted" for new purposes beyond what is believed to be their original function (Hodgkin, 1998). Quite simply, pleiotropy reflects the fact that most proteins have multiple roles in distinct cell types; thus, any genetic change that alters gene expression or function can potentially have wide-ranging effects in a variety of tissues.

Scitable - Pleiotropy: One Gene Can Affect Multiple Traits, Ingrid Lobo, 2008
Several examples are given in the above article on pleiotropy.

Of course, the ID charlatans, loons and liars market their wares to customers who can't tell a bird from bat and have no problem with talking snakes, and want above all for them to stay that way. They would rather their dupes imagined that evolution means every new structure has to evolve in isolation and is somehow estopped from using pre-existing structures, without explaining how a perfectly natural, undirected and unintelligent process could be prevented from incorporating any suitable structures, proteins, processes, metabolic pathways, etc into a mechanism if using it gave the genes an advantage which would make them more likely to produce descendents.

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