Thursday, 19 September 2024

Malevolent Designer News - How A Parasitic Wasp Targets Adult Fruit Flies


Newly-discovered parasitoid wasp, Syntretus perlmani. Scale bar: 1mm.

New species of wasp ‘hidden in plain sight’ discovered by MSU researchers | Mississippi State University

The world of parasites is a world that creationists need to turn a blind eye to (and not one blinded by a parasitic worm) because it contains abundant examples of how an intelligence that designed parasites can only be regarded as some sort of malevolent sadist who designs ways to make living things suffer, often horribly and in especially ghoulish ways - the sort of ways that only a sick mind could dream up.

Creationist cult leaders are also probably reticent about discussing parasites, given their parasitic lifestyle, but that’s a different matter.

Within the world of parasites, there are fewer better examples of the casual cruelty that characterises it than those of the many parasitoid wasps that lay their eggs in the living bodies of their host species, where their larvae feed on the body of the host, often only killing it at the last moment and sometimes manipulating its victim or reanimating its dead body to protect the parasites within it.

Very many of these parasitoid wasps attack the larvae of other insects and gain the protection of the eventual cocoon their host makes before dying, so the wasp's reproductive cycle is linked to that of its host species.

Refuting Creationism - Humans Probably Exterminated The Pygmy Hippos and Elephants On Cyprus - 3-4,000 Years Before 'Creation Week'


Cypriot pygmy hippos, Hippopotamus minor
Small populations of Stone Age people drove dwarf hippos and elephants to extinction on Cyprus

Today's routine refutation of creationism comes in the form of an article about the pygmy fauna on the Mediterranean island of Cyprus, that, along with similar pygmy fauna on other Mediterranean islands, was probably exterminated by early modern humans 3,000 - 4,000 years before the mythical 'Creation Week'.

The article is by Corey J. A. Bradshaw, Matthew Flinders Professor of Global Ecology and Node Leader in the ARC Centre of Excellence for Indigenous and Environmental Histories and Futures, Flinders University; Christian Reepmeyer, Deputy Director - Oceania, Deutsches Archäologisches Institut - German Archaeological Institute, and Theodora Moutsiou, Special Scientist, University of Cyprus, published in The Conversation. It is reprinted here under a Creative Commons licence, reformatted for stylistic consistency.

But first a little background to the Mediterranean island pygmy fauna:

Wednesday, 18 September 2024

Refuting Creationism - Aotearoa New Zealand's Rich Fauna - 20 Million Years Before 'Creation Week'


Artist's impression of the Miocene landscape of Aotearoa New Zealand’s South Island
Kākāpō are the true ancient species of Aotearoa… | Canterbury Museum

The Bronze Age Middle Eastern Pastoralists who made up the Hebrew origin myths could have known nothing about a southern hemisphere, let alone archipelagoes like New Zealand (or to give the name that more accurately reflects its dual cultures, Māori and European, Aotearoa New Zealand) and they knew nothing of the rich history of Earth's wildlife, so they said not a word about it in their mythology.

So, we have the ludicrous situation where a sizable proportion of people - especially Americans - think nothing older than about 10,000 years and nothing that wasn't known to parochial Middle Eastern pastoralists, ever existed, despite the abundant evidence that it did and that it had ancestors very much older.

What information do you have on the St* Bathan's fauna found in the Bannockburn Formation on New Zealand's South Island? The St. Bathans Fauna is a remarkable fossil assemblage from the Early Miocene (around 19-16 million years ago) found in the Bannockburn Formation in New Zealand's South Island. Discovered near the small town of St. Bathans, this fossil site is part of the Manuherikia Group, which is known for providing a window into New Zealand's unique prehistoric ecosystem.

Here’s a detailed overview of the St. Bathans fauna and its significance:
  1. Paleontological Importance
    • The fossils represent a critical period when New Zealand was transitioning from being an isolated landmass with its own flora and fauna. This period is significant for the evolution of New Zealand's unique species after it split from Gondwana.
    • The St. Bathans Fauna provides insights into how climate change affected New Zealand's environment and species during the Miocene epoch. At that time, the region was much warmer and covered with subtropical forests and wetlands, a stark contrast to the cooler, drier conditions that followed in the Pliocene and Pleistocene.
  2. Vertebrate Fossils
    • Birds: The site is most famous for its extensive and diverse avian fossil record. Notable examples include:
      • The giant flightless bird species similar to moa (though these are not the moa we are familiar with).
      • Ancient species of waterfowl, shorebirds, and parrots, some of which are now extinct.
      • Fossils of a possible heron species, various songbirds, and even a previously unknown eagle.
    • Mammals: Mammal fossils in New Zealand are rare, but the St. Bathans site yielded intriguing examples of early mammals. These include:
      • A small, shrew-like mammal (perhaps representing one of the only land mammals known in New Zealand before humans introduced others).
      • Marsupial fossils that hint at a lineage distinct from modern marsupials in Australasia.
    • Reptiles: Various lizard and possible gecko remains have been found, along with fossils that may represent tuatara ancestors.
    • Fish: Several species of freshwater fish, especially primitive forms such as galaxiids, have been found, showing that New Zealand's fish diversity extended back tens of millions of years.
  3. Flora
    • Plant fossils from the same region indicate that the Miocene landscape was densely vegetated with subtropical and temperate plants, including ferns, conifers, and flowering plants. The existence of forests and wetlands provided ideal habitats for the wide variety of animals found there.
  4. Significance for Climate and Ecological Studies
    • The St. Bathans fauna gives researchers a clear picture of what New Zealand's environment was like during a warmer period of Earth's history, making it invaluable for studies on climate change and its impact on ecosystems over time.
    • It shows a diversity of life forms that existed before the drastic cooling in the Pliocene, which led to the extinction of several species.
  5. Unique Species
    • One of the notable discoveries includes a species dubbed the "St. Bathans mammal," which is a mysterious, small mammal species. New Zealand is generally known for its lack of native land mammals, but this discovery suggests that mammals may have once been present in ancient New Zealand, challenging previous assumptions.
    • Bird species found in the Bannockburn Formation are also unique, some showing traits that link them to extinct lineages or suggest evolutionary connections with species outside New Zealand.

The St. Bathans fossil site continues to be a rich source of paleontological discovery, providing ongoing insights into the Miocene ecosystems of New Zealand and the biogeographical history of its fauna and flora.
For example, palaeontologists are discovering more fossils of the so-called St Bathan's fauna that charcterised Aotearoa New Zealand's South Island, most of which are of extinct species. These are being found in rocks known as the Bannockburn Formation that formed in an ancient lake by a team led by Associate Professor Trevor Worthy of Flinders University, Australia and including Dr Paul Scofield, senior curator of natural history, Canterbury Museum, Christchurch, Aotearoa New Zealand. They have recently published their findings, open access, in the journal Geobios:
Kākāpō are the true ancient species of Aotearoa New Zealand
Aotearoa New Zealand’s true ancient species are animals like Kākāpō, small wrens, bats and freshwater limpets, not recent Aussie immigrants like kiwi, moa and takahē.
This is the conclusion reached by an international team of palaeontologists after two decades of groundbreaking research at the St Bathans fossil site in Central Otago recently published in Geobios.

The team, including Canterbury Museum Senior Curator Natural History Dr Paul Scofield, have been excavating the large St Bathans site since 2001, uncovering thousands of fossil bones. The site, which was once at the bottom of a large prehistoric lake, offers the only significant insight into Aotearoa‘s non-marine wildlife from 20 million years ago.

The new research summarises the extraordinary creatures discovered in the more than 9,000 specimens collected across 23 years. Exotic creatures identified at the site include a giant parrot that the scientists nicknamed “Squawkzilla”, two mystery mammals, flamingos, a 3-metre crocodile, a giant horned turtle and a giant bat.

Reconstruction of the 1m tall giant parrot Heracles inexpectatus, dwarfing a bevy of 8 cm high Kuiornis – small New Zealand wrens scuttling about on the forest floor.

Illustration: Dr Brian Choo, Flinders University.
Paul Scofield, who has been involved in digs at St Bathans since 2002, said the research had prompted a rethink of our native fauna.

Many of the species that we thought of as iconic New Zealand natives – a classic example would be the takahē – we now know are relatively recent blow-ins from Australia, arriving only a few million years ago. Twenty-three years of digging at St Bathans has changed our idea about the age of the New Zealand fauna and the importance of some animals over others. For example, until now we thought that birds like kiwi and moa were among the oldest representatives of New Zealand fauna. We are now realising that the Kākāpō, tiny New Zealand wrens and bats, and even a bizarre freshwater limpet, are the real ancient New Zealand natives.

Dr Paul Scofield, co-author
Canterbury Museum
Christchurch, New Zealand


The research concludes that this menagerie of exotic animals was wiped out by dramatic temperature drops over the last about 5 million years.

Lead author Flinders University Associate Professor Trevor Worthy said 23 years of research at St Bathans had transformed our understanding of how non-marine vertebrate life in New Zealand looked around 20 million years ago during the Early Miocene era.

It’s exciting to be involved in a project that continues to make absolutely fresh discoveries about what animals lived in New Zealand’s lakes and rivers, and the forests around them, during this critical period in history. Every year we find new specimens. Finds that reveal amazing new species that we couldn’t have imagined when we first started working there.

Associate Professor Trevor H. Worthy, lead author
College of Science and Engineering
Flinders University
Adelaide, South Australia, Australia

Study co-author Dr Vanesa De Pietri of the University of Canterbury said the animals that lived in New Zealand 20 million years ago were very different to what we have now.

For example, we had another giant eagle that was not related to Haast’s Eagle. We had a whole bunch of songbirds that were quite different, crocodiles and even potentially a small mammal that we’ve nicknamed the waddling mouse. We are still in the middle of our research into understanding exactly what that was.

Dr Vanesa L. De Pietri, co-author
School of Earth and Environment
University of Canterbury
Christchurch, New Zealand.

The latest research paper was a collaboration between Flinders University, Canterbury Museum, Te Whare Wānanga o Waitaha University of Canterbury, The University of Queensland, University of Copenhagen and University of New South Wales.
Artist's impression of the St. Bathans Fauna. Source: New Zealand Geographic
Illustrations: Tom Simpson
Abstract
The St Bathans Fauna, from sites near the village of St Bathans, Central Otago, South Island, is the first substantive pre-Quaternary terrestrial vertebrate fossil fauna discovered in New Zealand. This fauna derives from 33 sites or discrete sedimentary beds located in the lower 50 m of the lacustrine Bannockburn Formation, Manuherikia Group, and is generally accepted as local stage Altonian (19–15.9 Ma; Burdigalian, Early Miocene) in age. Investigations since 2001 have revealed an abundant and diverse fauna from over 9000 catalogued lots that is herein reviewed. Invertebrates notably include eight genera and species of terrestrial molluscs. Among vertebrates, freshwater fish remains dominate with 17 species evidenced by 16,500 analysed otoliths (genera Neochanna, Galaxias, Prototroctes, and Mataichthys) and many thousands of bones. Birds (minimally 45 species, several thousand bones) are the most common non-fish vertebrates, among which waterfowls dominate all assemblages (10 species). Co-occurring with these was a diverse herpetofauna, including undetermined crocodylians and a terrestrial turtle, both absent in Recent faunas. Significantly, the St Bathans Fauna evidences that Zealandia already had all of New Zealand’s ‘old’ endemic Recent taxa (sphenodontids, leiopelmatids, dinornithiforms, apterygids, aptornithids, strigopoid parrots, acanthisittids, and mystacinids) during the Early Miocene. Furthermore, it includes Australasia’s oldest ardeids, two flightless rallids, a novel higher landbird family, a greater diversity of bats, and terrestrial mammals. All sites reflect a single fauna, except that the ducks Manuherikia lacustrina (stratigraphically lower in section) and M. primadividua (higher) have a mutually exclusive distribution that is not yet correlated with any other biotic distribution differences.

1. Introduction New Zealand is a small emergent part of the India-sized continent of Zealandia that is largely submerged and from which New Caledonia, Lord Howe, Norfolk Island, the Chatham Islands, and the New Zealand subantarctic islands all project (Mortimer et al., 2017, Strogen et al., 2023). The New Zealand archipelago includes 800+ islands >1 ha, totalling 270,000 km2, of which North Island (114,740 km2) and South Island (151,120 km2) are the largest. Mainland New Zealand (North and South islands) averages ca. 2000 km from Australia. Seafloor-spreading that initiated 85–80 Ma in the south of the present Tasman Sea gradually rifted the new continent Zealandia from Eastern Gondwana, with rifting complete in the north by 60–55 Ma (Gaina et al., 1998, Schellart et al., 2006). The recent reconstructions by Strogen et al. (2023) developed these early models and in addition have a focus on land on Zealandia. They show Zealandia became fully separated from the Australian part of East Gondwana ca. 57 Ma although land connections had already been severed in the preceding few million years (Strogen et al., 2023). Thereafter, land area was progressively reduced, as the continent submerged, until the Late Oligocene marine highstand when ∼150,000 km2 remained (Strogen et al., 2023). Subsequently, land area increased, especially after the Australia–Pacific plate boundary migrated from its mid-Tasman Sea spreading centre to become propagated through New Zealand during the Early Miocene ∼18–16 Ma forming the Alpine Fault and resulting in regional uplift.

If only the authors of Genesis had been a little better informed about the real world and its history, they could have come up with at least a half plausible creation myth by including some of the fauna from distant lands from millions of years ago, even if they felt they had to include magic to explain a world they thought ran on it.

As it was, their parochial ignorance was about the worst imaginable preparation for the task, hence the laughable result that could only be believed by someone at least as parochially ignorant as they were.

Tuesday, 17 September 2024

Refuting Creationism - Arctic Sled Dogs Had Already Diversified Into Two Types At Least 1,700 Years Before 'Creation Week'


A team of Siberian huskies races in the Anchorage Fur Rendezvous in 2013 in Alaska.

Britt Coon
Genomics reveals sled dogs’ Siberian lineage | Cornell Chronicle

The History of dogs and their co-evolution with humans as they diverged from their wolf ancestors is a fascinating and complex story, most of which, like 99.9975% of all of the history of life on Earth occurred before creationist's legendary 'Creation Week'.

'Creation Week' is when creationists believe a magic god made of nothing magicked a small universe consisting of a single flat planet with a dome over it, centred on the Middle East, all out of nothing, in just 6 days about 10,000 years ago, (although why an omnipotent god couldn't have done it all in an instant and needed 6 full days, with a day to recover from the effort, is never explained).

Monday, 16 September 2024

Refuting Creationism - Teenage Puberty, 15,000 Years Before 'Creation Week'


Reconstruction of Romito 2, a 16-year-old teenager with a form of dwarfism who lived 11,000 years ago in southern Italy.
Drawing by: Olivier Graveleau.
Realities of Ice Age puberty - University of Victoria

The thing about this study from a creationist perspective is its two-fold refutation of basic creationist dogma.

Firstly, it is not so much that teenagers in the last Ice Age went through puberty at pretty much the same age as modern teenagers, despite an assumed improvement in the diet of modern people compared to that of a Pleistocene hunter-gatherer, but that there were actually human teenagers 15,000 years before creationist dogma says that there was an Earth.

Secondly, there is the fact that the remains of these teenagers are available for analysis, when the mythical global genocidal flood, so beloved of creationists, should have swept it all away.

But counter-factual creationism is never perturbed by scientific evidence because, as all creationists know, scientific evidence is either lies made up by evil scientists, or just plain wrong as 'proven' by the fact that creationist cult leaders say so and it doesn't conform with what a bunch of scientifically-illiterate Bronze Age pastoralists who thought the universe consisted of a small flat planet with a dome over it, made up in their origin myths.

Refuting Creationism - Why 'Living Fossils' Aren't A Problem For Science


The once widespread coelacanth is now confined to deep-sea caves off the coast of Africa
AP
From coelacanths to crinoids: these 9 ‘living fossils’ haven’t changed in millions of years

While researching for my previous post, I came across this article in The Conversation which explains how and why some organisms appear to have remained unchanged for millions of years.

To creationist fools, inculcated to believe that the Theory of Evolution (TOE) says all organisms must change over time and is all about the fossil record, these apparent prolonged periods of morphological stability run counter to the TOE and so disprove it. To people so misled, these exceptions disprove the 'rule'.

But that is just what they are - exceptions - to the general tendency of organisms to respond to environmental changes by evolving to maintain their fitness to survive and reproduce in that environment. If their environment remains unchanged or fails to change in a way that is detrimental to their success, there is no pressure to change, especially morphologically. What we can't tell though is how much they change genetically, particularly in the non-coding areas of their DNA where changes are neutral.

Here then is a short list of 'living fossils' which, to those who understand the subject, are not a problem for evolutionary biology, though they are a problem for creationists who have to try to live with their favourite 'proof' that evolution is false involving organisms remaining unchanged for millions of years in a world which they believe is just a few thousand years old, and so shouldn't have fossils from millions of years ago.

The article is by Alice Clement, a Research Associate in the College of Science and Engineering, Flinders University. Her article is reprinted here under a Creative Commons license, reformatted for stylistic consistency:

Sunday, 15 September 2024

Refuting Creationism - How Creationists Lie To Us - The Coelacanths


The once widespread coelacanth is now confined to deep-sea caves off the coast of Africa
(AP)
Exceptional new fish fossil sparks rethink of how Earth’s geology drives evolution

In that strange logic that passes for rational thought in creationist circles, creationists will tell you that the 'fact' that coelacanths haven't changed for millions of years 'proves' the Theory of Evolution is false. Also, the 'fact' that scientists used to think coelacanths were extinct until one was caught, 'proves' science is all wrong, so Earth is only a few thousand years old [sic].

But of course, as with every other 'proof' of creationism, the 'facts' presented are in fact lies, intelligently designed by cult leaders to appeal to the child-like minds of creationists desperate for real-world evidence for their inherited superstition.

Firstly, coelacanths are not a species but a family consisting of several genera and they have changed over the millions of years between the most recent fossil and today and in its heyday, there were over 175 known species so far identified in the fossil record.

Secondly, the fact that scientists thought the entire family was extinct was simply based on the sudden disappearance of them in the fossil record and the fact that no living specimens had been seen - until one was caught. Scientists then changed their minds because the facts changed. The 'extinction' of the coelacanths was not a central part of the Theory of Evolution.

Friday, 13 September 2024

Refuting Creationism - How Earth Became 'Fine-Tuned' For Death And Extinction


The synapsid Lystrosaurus survived the mass extinction and came to dominate the landscape later.

Julio Lacerda
September: El Nino | News and features | University of Bristol

Creationist claims that Earth was created perfectly designed for life (especially their life) are farcical and can only be believed by people carefully ignorant of the facts.

Of course, insisting that Earth is merely a few thousand years old, makes it easier to dismiss the 99.9975% of it that proves them wrong.

In my previous post I wrote about a newly-discovered trilobite with an additional pair of legs, and the reason we don't have them scuttling over marine sediment any more is because Earth turned against them when a climate catastrophe caused a marine catastrophe, depriving the oxygen-dependent organism's living in it of oxygen. This was one of the so-called Oceanic Deoxygenation Events.

That explains the mass extinction of marine life, but the question is, why did it also cause a terrestrial mass extinction of comparative severity?

Refuting Creationism - How Many Legs Had A Trilobite 250-300 Million Years Before 'Creation Week'?


Cambrian trilobite
AI generated (ChatGPT40)
New York State Fossils Reveal Extra Set of Trilobite Legs | AMNH

In that vast amount of time before creationism's god allegedly created a small flat planet with a dome over it, containing nothing and nowhere that wasn't known to the Bronze Age Canaanite pastoralists who first wrote about it, when 99.9975% of Earth’s history happened, there were swarms of trilobites living in the seas and regularly molting to leave hard body parts to fossilise in the marine sediment.

They did this so frequently that trilobites are now amongst the commonest of fossils, but nevertheless fossils preserving the soft body parts are rare, like the soft body parts of the rest of the Cambrian biota.

However, just such a fossil has turned up in upstate New York that shows something surprising - it has an additional pair of legs to the usual trilobite complement. This discovery is the subject of a paper in the journal Palaeontology (the journal of the Palaeontological Association) by Jin-Bo Hou from Nanjing University and Professor Melanie Hopkins, curator and chair of the American Museum of Natural History’s Division of Paleontology. The discovery is described in an American Natural History Museum news article:

Thursday, 12 September 2024

Unintelligent Design - Why A New Zealand Flighless Parrot Comes In Two Colour Forms


Female kākāpō and chick
Flightless parrot in New Zealand developed different feather colors to evade predatory birds | ScienceDaily

The flightless kākāpō of New Zealand, a critically endangered member of the parrot family comes in two colour forms - olive and green - and neither seems to convey any obvious advantage over the other.

As an example of intelligent [sic] design, this would be an example of muddle and incompetence since, no matter how slight, one colour form would be better than the other so there would be no point in having two. It might be easier to manufacture one set of pigments for example, and having the ability to produce two different color forms with variants of the same genome when there is no advantage of one over the other is an unnecessary complexity of which any half-decent intelligent designer would be ashamed.

But as an example of what evolution by natural selection can produce, it makes perfect sense, especially when whatever environmental selectors produced the two colour forms might not now exist, so the cause might not now be obvious to a casual observer, unaware of the historical environment in which these traits evolved.

Wednesday, 11 September 2024

Malevolent Designer News - Creationism's Favourite Pestilential Malevolence Is Improving Its Delivery System


Aedes albopicus
Photo by James Gathany/CDC
Study identifies areas of Europe at risk from dengue fever | UK Centre for Ecology & Hydrology

For devotees of creationism's putative intelligent [sic] designer, news that it is using a new, improved mosquito to deliver dengue fever to more people, including those in the densely populated continent of Europe, will be greeted with admiration for its creative genius.

Those with a more rational, adult understanding of the evidence will see this news as a natural consequence of environmental change and exactly the sort of thing evolution can produce, precisely as the Theory of Evolution predicts.

The news is that climate change has enabled the Asian tiger mosquito, Aedes albopictus, to extend its range into Europe and with it the virus that causes dengue fever or which the tiger mosquito is a vector.

Tuesday, 10 September 2024

Unintelligent Design - How Japanese Eels Are Designed To Escape From the Stomach Of Fish Designed To Eat Them


Japanese eel, Anguilla japonica
How Japanese eels escape from their predator's stomach | ScienceDaily

If creationism’s putative intelligent [sic] designer set out to show how stupid it can be, it would be hard pressed to come up with something as bizarre as designing a fish to eat eels, then designing eels to be able to escape from the stomach of the predators designed to eat them.

And yet creationists must believe that's exactly what their hyper-intelligent, omniscient god has done, according to the discovery of a team of researchers from the Graduate School of Fisheries and Environmental Sciences, Nagasaki University, Nagasaki, Japan.

According to their report in the Cell Press journal Current Biology, juvenile Japanese eels, Anguilla japonica, can escape from the stomach of the predatory fish Odontobutis obscura by travelling back up the fish's oesophagus and out through a gill slit.

Refuting Creationism - Migration Into Iberia When Creationists Think Earth Was Under A Genocidal Flood


AI-gerated depiction of a Yamnaya migration caravan.
(Spot the errors!)
Theory of a violent invasion of the Iberian Peninsula in Late Prehistory now questioned - Universitat Autònoma de Barcelona - UAB Barcelona

Had the ancient inhabitants of the Iberian Peninsula contrived to get their oral history and origin myths written down in the same way that the Bronze Age Canaanite pastoralists did, we might have had a slightly more accurate and less implausible history. It certainly wouldn't have had daft tales about a global genocidal flood just at the time newcomers with new ideas, a new language and new techniques of animal husbandry were migrating into the area having traversed Western Europe from the Steppes of Central Asia.

Unlike the parochial Canaanite nonsense, it might well have had people, places and animals from more than a day or two's walk from the Canaanite Hills.

Archaeological evidence shows that, at the time when creationist superstition says everyone had been drowned in a genocidal, global flood several thousand feet deep, by a vindictive god, people originating on the Steppes of Central Asia were migrating across western Europe and into the Iberian Peninsula, as though nothing unusual was happening.

Monday, 9 September 2024

Malevolent Designer News - What Was The Divine Malevolence Doing With Plague Bacteria 5000 years ago?


In the study, scientists performed a genetic analysis on the bones of 133 human individuals from late Neolithic megalithic graves near Warburg in North Rhine-Westphalia. The team discovered the genome of the bacterium Yersinia pestis in the bone samples of two independent individuals. Additionally, previously published genomic data from a bone sample of a Neolithic dog found in Ajvide (Sweden) suggested a potential infection route.

© Carsten Reckweg, CRC 1266/Uni Kiel
Neolithic plague bacterium did not cause mass mortality

What was creationism's divine malevolence up to with one of its most successful pathogens with which if killed hundreds of millions and changes society - the Yersinia pestis bacterium which caused the waves of black death and plague that regularly spread across the world?

It seems to have been experimenting, possibly trying to either perfect its virulence or work out the best delivery system to ensure it got to and killed as many people as possible. Sometimes, entire villages were wiped out. Not far from where I currently live are a couple of former villages that disappeared during the black death - the village of Woodperry near Oxford is an example, surviving now only in the name 'Woodperry Road' and a farmhouse later built on the site.

But 5000 years ago, Y. pestis doesn't seem to have been anything like a virulent as it became in the 12th Century. According to a recent discovery, it was capable of killing the occasional neolithic farmer but not of becoming a major pandemic able to kill hundreds of thousands and depopulate vast areas.

So, what changed, and more to the point, which explanation would a creationist prefer; the one which blames their god or the one which attributes it to evolution, climate change and cultural changes in human society? One thing we can be sure of though is the Michael J. Behe's biologically nonsensical religious apologetic of 'genetic entropy', causing the bacterium to 'devolve' away from an assumed created perfection (as though that were remotely possible), can be ruled out, because whatever the changes were, it led to a massive increase in the number of Y. pestis organisms, so was indisputably beneficial to it - in other words, in classical terms, it evolved.

Sunday, 8 September 2024

Refuting Creationism - How Earth's Unstable Landmasses Keep Driving Evolution


Rift Valley in Kenya, Africa, where plates are pulling apart.

Witness 1.8 billion years of tectonic plates dance across Earth’s surface in a new animation

The basis for any evolutionary change is environmental change. Providing that change is slow enough for living organisms to adapt they will adapt and change as the environment changes. This is how life contrives to make Earth look as though it is fine-tuned for life when the reality is that life is fine-tuned for Earth and the tuning mechanism is evolution.

But ask any small-town, American Bible Belt creationist and they will assure you Earth was perfectly designed for life, especially life of the human variety. It's pretty much like small-town American Bible Belt country, all over!

In fact, throughout its history, 99.9975% of which occurred before creationists think Earth was created, Earth has been in a state of dynamic change which, as soon as life manages to get close to tuning itself to it, it’s changed again. The underlying cause of this is mostly plate tectonics which keeps on breaking landmasses apart, sending them scudding across the surface of the planet from the tropics to the poles and ramming them into one another again, creating uplift mountains, deep ocean trenches and volcanos which keep pumping out greenhouse gasses and changing the climate, sometimes quite suddenly.

To illustrate this, a team of geologists, led by Xianzhi Cao of Ocean University of China, and including Professor Allan S. Collins of The University of Adelaide, Australia have reconstructed the last 1.8 billion years of Earth's geography.

How they did it and what it tells us is the subject of an article by Professor Collins in The Conversation. His article is reprinted here under a Creative Commons licence, reformatted for stylistic consistency:

Refuting Creationism - Co-Evolution Of Humans And Their Gut Microbiome


Development of the infant gut microbiome

AI generated image
(complete with spelling idiosyncrasies)
Natural probiotic discovered in UK newborns’ microbiomes

In a very nice example of how humans and their gut microbiome have co-evolved, researchers from the Wellcome Sanger Institute, University College London (UCL), and the University of Birmingham, have identified a bacterium that helps digest breast milk and protects the baby from harmful pathogens.

As an example of intelligent [sic] design, this comes as close to a Heath-Robinson solution to a problem of the designer's own making as it's possible to imagine.

No designer who designed a baby's digestive system so it is susceptible to the harmful pathogens that it also designed, and created the baby to feed on breast milk that is difficult to digest, then solved those problems by creating another bacterium to fight the pathogens and help digest the milk, and infecting the baby with it, doesn't deserve the adjective 'intelligent'. 'Bloody stupid' would be a more appropriate term.

It's almost exactly as though the designer of these systems is a mindless automaton, simply obeying the natural laws of chemistry and physics and working without a plan!

The researchers have completed the largest study of UK baby microbiomes to date, carrying out whole genome sequencing to analyse stool samples from 1,288 healthy infants, all under one month old from the UK Baby Biome Study1.1.

Malevolent Designer News - How An Oral Bacteria Aggrevates Rheumatoid Arthritis


Colorized image of a colony of Actinobacillus actinomycetemcomitans

Derren Ready/Wellcome Images
CC BY-NC-ND 3.0
Shedding Light on How Oral Bacteria Can Aggravate Rheumatoid Arthritis|Tokyo Medical and Dental University, National University Corporation

Not content with the suffering that gum disease and dental caries cause, creationism's divine malevolence used at least one of the pathogens behind those problems to increase suffering a little more by aggrevating rhuematoid arthritis.

That's the inevitable conclusion honest creationist, who rejects the notion of evolution in which pathogenic parasites evolve naturally without intent, malevolent, benign or indifferent, should be drawing from the evidence from a Tokyo Medical and Dental University team of researchers led by Tokuju Okano and Toshihiko Suzuki of the Department of Bacterial Pathogenesis recently published in the International Journal of Oral Science.

This is not the first instance of creationism's divine malevolence multi-tasking its pathogens: in 2017 a team of researchers from The Chinese University of Hong Kong found a link between five oral bacteria, Peptostreptococcus stomatis, Streptococcus anginosus, Parvimonas micra, Slackia exigua and Dialister pneumosintes and the incidence of stomach and eosphageal cancer.

The oral bacterium which has been found to be aggrevating rheumatoid arthritis is Aggregatibacter actinomycetemcomitans.

Saturday, 7 September 2024

Refuting Creationism - Selfish Genes Evolved Cooperative Alliances


Fish swimming past coral and marine sponge. The researchers are currently using the proposed framework to investigate microbes inside marine sponges.
Researchers create new framework to help understand how microbial communities emerge - Swansea University

One of the lines of attack against the science of evolutionary biology is the lie that Richard Dawkins was advocating selfishness with his seminal book, The Selfish Gene, so 'proving' that rejection of the Christian god as the explanation for biodiversity is because 'Evolutionists' just want to sin.

It is, of course, like other creationist attacks on science, utterly devoid of any factual basis and reflects badly both on those who seek to fool their target dupes with it and on their dupes who eagerly believe them in order to justify a pretense of moral superiority.

In fact, natural selection and differential success of different alleles within a selective environment is devoid of any moral contents because it is devoid of intelligent input and genes are passive in the process. In Dawkin’s analogy, the result is as though genes behave selfishly, not that they make moral decisions or have the ability to choose which environmental selectors act on them.

One of the predictable outcomes of this gene-centred approach is that in a competition, the result which suits all competitors is cooperation since in a cooperative alliance, all the genes are winners, just as with a human group, a cooperative group is invariably more successful than a group of competing individuals in perpetual conflict.

Refuting Creationism - Earliest Ancestors of the Tasmanian Tiger Were Alive 23-25 Million Years Before 'Creation Week'


Tasmanian tiger, Thylacinus cynocephalus
AI generated image.
Earliest known ancestors of the extinct Tasmanian Tiger discovered – and some could even eat the bones and teeth of their prey - Taylor & Francis Newsroom

88 years ago today, the last Tasmanian tiger died in Beaumaris Zoo, Hobart, Tasmania.

It was the last in a line of carnivorous marsupial going back at least 23-25 million years ago, in the extended period of Earth's pre-'Creation Week' history when creationists believe there was nothing out of which a magic man made of nothing made everything in 6 days, just 10,000 years ago. According to creationist mythology, the Tasmanian tiger would have had no ancestors, being magically made from dirt just like every other living species.

This makes it hard for creation to explain the evidence of all those fossils known to be far older than 10,000 years and showing evidence of the evolution of extant species from ancient ancestors as species diversified from a single common ancestor which lived hundreds of millions of years ago, but then facts were never a problem for counter-factual creationism.

What information do you have on the extinct Tasmanian tiger? The Tasmanian tiger, also known as the thylacine (Thylacinus cynocephalus), was a carnivorous marsupial native to Tasmania, mainland Australia, and New Guinea. The thylacine looked somewhat like a medium-to-large dog with a slender body, a head resembling that of a wolf or dog, and distinctive dark stripes across its back and tail, giving it the nickname "Tasmanian tiger." However, it was more closely related to kangaroos and other marsupials.

Key Information about the Tasmanian Tiger:
  1. Physical Description:
    • The thylacine was about the size of a large dog, with a length of up to 1.8 to 2 meters (including the tail) and a height at the shoulder of about 60 cm.
    • Its fur was short and coarse, typically tan or yellow-brown, with 13 to 20 dark stripes across its back and tail.
    • It had a long, stiff tail, similar to a kangaroo's, and could open its jaws incredibly wide, up to 120 degrees.

  2. Habitat and Behavior:
    • The thylacine was a nocturnal and solitary animal, hunting at night and resting during the day in a den or hollow log.
    • It primarily fed on small to medium-sized animals, such as kangaroos, birds, and small mammals. Its diet may have also included carrion.

  3. Extinction:
    • The thylacine was driven to extinction on the Australian mainland thousands of years ago, likely due to competition with humans and the dingo, a wild dog introduced to Australia.
    • In Tasmania, the species persisted until the 20th century. The last known wild thylacine was killed in 1930, and the last known individual in captivity died in 1936 at the Hobart Zoo in Tasmania.
    • Its extinction was primarily due to human activities, including hunting (encouraged by a bounty system), habitat destruction, and the introduction of diseases.

  4. Conservation Efforts and "Rediscovery" Claims:
    • Despite being declared extinct, there have been numerous unconfirmed sightings and efforts to find surviving thylacines, but none have been scientifically verified.
    • Some scientific projects have explored the possibility of "de-extinction" using preserved DNA from museum specimens, but these efforts remain largely theoretical.

  5. Cultural Significance:
    • The thylacine holds a unique place in Tasmanian culture and Australian folklore, often seen as a symbol of the tragedy of extinction and the need for wildlife conservation.
    • It appears on Tasmania's coat of arms and has been the subject of various books, documentaries, and studies.

Would you like to know more about any specific aspect of the Tasmanian tiger?
How the oldest ancestors of the Tasmanian tiger were discovered by palaeontologists from the University of New South Wales, Australia, is the subject of a Taylor & Francis news release:
Earliest known ancestors of the extinct Tasmanian Tiger discovered – and some could even eat the bones and teeth of their prey
A marsupial which had an “extremely thick” jawbone, enabling it to consume even the bones and teeth of its prey is among a discovery of three, new ancient species of the modern Thylacines – otherwise known as the Tasmanian tiger, which went extinct 88 years ago.
These new species each roamed Australia around 23-to-25 million years ago, during the late Oligocene, making them the “undoubted oldest members of this family ever discovered”.

Today – Australia’s National Threatened Species Day, which marks the death of the last Tasmanian Tiger in Hobart’s Beaumaris Zoo on the 7th of September 1936 – scientists from the University of New South Wales (UNSW) Vertebrate Palaeontology Lab publish their findings in the Journal of Vertebrate Paleontology.

The once suggested idea that Australia was dominated by reptilian carnivores during these 25 million-year-long intervals is steadily being dismantled as the fossil record of marsupial carnivores, such as these new thylacinids, increases with each new discovery. The diversity of mammalian carnivores at Riversleigh during this period rivals that seen in any other ecosystem, including the great mammalian carnivore radiation that developed in South America.

Timothy Churchill, lead author
University of New South Wales
Sydney, New South Wales, Australia.


The three new species were each found in the fossil-rich deposits in Riversleigh World Heritage Area.

The largest of these new species, Badjcinus timfaulkneri, weighed somewhere between 7-11 kilograms, about the same size as a large Tasmanian Devil. Alike the Tasmanian Devil, timfaulkneri possessed an extremely thick jawbone enabling it to consume the bones and teeth of its prey. This species is related to the much smaller, previously discovered B. turnbulli (2.7 kg) – which until now was the only other undoubted thylacinid known from the late Oligocene.

The dentary and isolated first molar of B. timfaulkneri were recovered from Hiatus Site which is even older than Riversleigh’s White Hunter Site where B. turnbulli was previously found, making B. timfaulkneri the oldest undoubted thylacine discovered so far.

Badjcinus timfaulkneri is named after Tim Faulkner, the director and co-owner of the Australian Reptile Park and managing director of Aussie Ark. Tim has dedicated his life to the conservation of Australia’s wildlife including the largest still-living marsupial carnivore, the Tasmanian Devil.

The second new species is Nimbacinus peterbridgei. This was about the size of a Maltese Terrier (~3.7 kg). This species is represented by a near-complete dentary from White Hunter Site. Nimbacinus peterbridgei was a predator that probably focused on small mammals and other diverse prey species that lived with it in the ancient forests. Species of Nimbacinus appear to be more closely related to the Tasmanian Tiger than other thylacinids of similar age. This means Nimbacinus peterbridgei is probably the oldest direct ancestor of the Tasmanian Tiger yet known.

Nimbacinus peterbridgei was named after Australian geologist, speleologist and bibliophile Peter Bridge. He has devoted his life to helping uncover Australia’s ancient past, particularly in the caves of Western Australia.

The last species, Ngamalacinus nigelmarveni was a ~5.1kg thylacinid – approximately the size of a Red fox. It was also from White Hunter Site at Riversleigh. The blades on the lower molars of species of Ngamalacinus are elongated with deep V-shaped carnassial (‘meat-cutting’) notches, suggesting they were highly carnivorous – more so than any of the other thylacinids of similar size.

Ngamalacinus nigelmarveni is named after Nigel Marven, a renowned British television documentary presenter famous for paleontology-inspired series like Prehistoric Park and Sea Monsters.

The presence of three distinct lineages of specialised thylacinids during the late Oligocene highlights how quickly they diversified after first appearing in the fossil record. These thylacinids exhibits very different dental adaptations, suggesting there were several unique carnivorous niches available during this period. All but one of these lineages, the one that led to the modern Thylacine, became extinct around 8 million years ago.

That lineage of these creatures that survived for more than 25 million years ended with the death of Benjamin, the last Tasmanian Tiger in Hobart’s Beaumaris Zoo on the 7th of September 1936.

Professor Michael Archer, co-author
University of New South Wales
Sydney, New South Wales, Australia.
ABSTRACT
New thylacinid species of Badjcinus, Nimbacinus, and Ngamalacinus are described from upper Oligocene deposits of the Riversleigh World Heritage Area, northwestern Queensland. Badjcinus timfaulkneri, Nimbacinus peterbridgei, and Ngamalacinus nigelmarveni are among the oldest thylacinids yet known and indicate an earlier diversification of the family than previously understood. Maximum parsimony analysis supports a sister group relationship between Ng. nigelmarveni and Ng. timmulvaneyi, but the relationships of the two other new taxa are unresolved. Bayesian dated total evidence analysis using morphological and molecular data supports the generic assignment of B. timfaulkneri and Ng. nigelmarveni but not that of Ni. peterbridgei. Both phylogenies herein support a taxonomic reassignment of Thylacinus macknessi to the genus Wabulacinus, a conclusion also supported by the results of previous studies. Body mass estimates based on molar size regressions indicate body sizes ranging from 3.7 kg to 11.4 kg for the new thylacinid species. Badjcinus timfaulkneri exhibits an extremely deep jaw compared with other thylacinids, with mandibular bending strength analysis suggesting that it was a highly durophagous carnivore much like the modern dasyurid Sarcophilus harrisii. This analysis also suggests Ni. peterbridgei had a dentary more similar in shape to that of plesiomorphic thylacinid faunivores such as Ni. dicksoni and T. cynocephalus suggesting that it had a relatively more generalist faunivorous diet. The molars of Ng. nigelmarveni suggest they were better suited for longitudinal slicing than the molars of B. timfaulkneri and Ni. peterbridgei, indicating a more hypercarnivorous diet compared with that of those species.

INTRODUCTION
There are 12 extinct species in the dasyuromorphian family Thylacinidae, 10 of which are from the Oligo-Miocene (26–5.3 Ma) (Rovinsky et al., 2019). Unlike during the Plio-Pleistocene (5.3–0.12 Ma), which is dominated by large hypercarnivorous species of Thylacinus (15–55 kg), the Oligo-Miocene radiation exhibits considerably higher generic diversity, with seven monospecific clades known from the Riversleigh World Heritage Area in northwestern Queensland, all of which were between 3–10 kg in body mass. This restriction in size suggests thylacinids occupied most of the small- to medium-sized faunivorous niches at Riversleigh (1–10 kg). Contemporary peramelemorphians (∼50 g–1.5 kg) (Gurovich et al., 2014; Travouillon et al., 2013; Travouillon et al., 2010, 2014.1) and thylacoleonids (∼10–50 kg) (Gillespie, 2023; Gillespie et al., 2016, 2019.1a, 2019.2b) occupied relatively smaller and larger carnivore niches.

The oldest undoubted thylacinid, Badjcinus turnbulli Muirhead & Wroe, 1998, is known only from White Hunter Site in the Riversleigh World Heritage Area. This and other late Oligocene sites at Riversleigh have not yet been radiometrically dated. White Hunter Site is interpreted to be late Oligocene in age because of the presence of the ilariid Kuterintja ngama, otherwise only known from the Ngama Local Fauna from the Etadunna Formation, which is magnetostratigraphically dated to 24.8–25 Ma (Myers & Archer, 1997; Woodburne et al., 1994). Riversleigh’s Faunal Zone A (FZA) deposits contain taxa that support a late Oligocene age (Arena et al., 2016.1; Travouillon et al., 2006). The relatively plesiomorphic dentition of B. turnbulli has led to difficulty in taxonomic assignment, with phylogenetic analyses placing it either as a basally branching member of Thylacinidae (Kealy & Beck, 2017; Muirhead & Wroe, 1998; Murray & Megirian, 2006.1a; Wroe & Musser, 2001), as a stem dasyurid (Wroe et al., 2000), or as a sister group to Dasyuromorphia as a whole (Kealy & Beck, 2017).

Only two other thylacinid fossils are known from upper Oligocene deposits. Originally assigned to Nimbacinus dicksoni but later reassigned to Thylacinidae incertae sedis, an isolated m2 (QM F16809) from D-Site at Riversleigh is the only other thylacinid known from Riversleigh’s upper Oligocene deposits (Muirhead & Archer, 1989; Murray & Megirian, 2000.1; Wroe & Musser, 2001). An isolated, broken M2 (NTM P2815–10) of a thylacinid is also known from the Pwerte Marnte Marnte Local Fauna (LF) in the Northern Territory, a deposit assumed to be upper Oligocene on the basis of biocorrelation (Murray & Megirian, 2006.2b; Woodburne et al., 1994). Although this upper molar, which is similar in size to the putative thylacinid Mutpuracinus archibaldi, was suggested by Murray and Megirian (2006.2b) to be the oldest thylacinid in the fossil record, there are doubts about its identification as a thylacinid (see Discussion).

Nimbacinus dicksoni Muirhead & Archer, 1989, is the best preserved and researched Miocene thylacinid (Attard et al., 2014.2; Murray & Megirian, 2000.1; Wroe & Musser, 2001). Multiple specimens including a near complete skull and skeleton are known from Middle Miocene deposits at Riversleigh and from the Bullock Creek LF in the Northern Territory. The dentition of Ni. dicksoni is relatively more plesiomorphic than that of other thylacinids (except possibly Muribacinus gadiyuli) in retaining slightly reduced metaconids on m2–4 and unreduced stylar cusps on M1–3. Previous morphofunctional analyses of the skull of Ni. dicksoni suggest it was a voracious predator capable of hunting prey larger than itself, with biting capabilities most similar to extant species of Dasyurus, rather than to the larger Thylacinus cynocephalus (Attard et al., 2014.2).

In addition to Nimbacinus dicksoni, four monotypic thylacinid genera are known from upper and lower dentitions recovered from Early and Middle Miocene Riversleigh deposits. These include the medium-sized (∼5–7 kg) Wabulacinus ridei and Ngamalacinus timmulvaneyi Muirhead, 1997.1, as well as the diminutive (∼1–2 kg) Muribacinus gadiyuli Wroe, 1996, and the large (∼18 kg) Maximucinus muirheadae Wroe, 2001.1a (Myers, 2001.2). The dentition of Ng. timmulvaneyi, W. ridei, and Ma. muirheadae have been considered to be relatively plesiomorphic in comparison with species of Thylacinus, but more derived than Ni. dicksoni (Muirhead, 1997.1). The diminutive Mur. gadiyuli is dentally the most plesiomorphic thylacinid known (Wroe, 1996).

Thylacinus macknessi Muirhead, 1992, from Riversleigh’s Early Miocene Neville’s Garden Site, is tentatively regarded as the earliest known member of the genus Thylacinus (Muirhead & Gillespie, 1995). This taxon possesses unique dental adaptations associated with a shift within the Thylacinus lineage towards hypercarnivory, including near complete loss of metaconids on m2–4, loss of entoconids, reduction of the lingual portion of the talonid margin in m2–4 and a lingual shift of the hypoconid so that the cristid obliqua forms a continuous longitudinal blade with the paracristid.

The powerful thylacine, T. potens Woodburne, 1967, from the Alcoota Local Fauna in the Northern Territory, has been interpreted on the basis of biocorrelation to be Late Miocene between 8.5 and 5.5 Ma (Megirian et al., 1996.1, 2010.1). It is the largest and most hypercarnivorous thylacinid known. It has been estimated to be between 30–56 kg in adult body mass (Myers, 2001.2; Wroe, 2001.1a), with some estimates exceeding 120 kg (Yates, 2014.3). Two additional species of Thylacinus with dental adaptations for increased carnivory, T. yorkellus and T. megiriani, are known from Upper Miocene to Lower Pliocene deposits (Murray, 1997.2; Yates, 2015).

Tyarrpecinus rothi Murray & Megirian, 2000.1, is a small thylacinid from the Late Miocene Alcoota Local Fauna of the Northern Territory. It is known from a broken maxilla that retains P2 and an isolated M2. The phylogenetic relationships and paleobiology of this taxon cannot be confidently determined until more complete craniodental material is found.

The quoll-sized Mutpuracinus archibaldi Murray & Megirian, 2000.1, known from a near complete skull with an incomplete upper and lower dentition from the Middle Miocene Bullock Creek LF in the Northern Territory (Murray & Megirian, 2006.1a), was initially considered to be an early thylacinid because of craniodental and basicranial similarities to plesiomorphic thylacinids such as Ni. dicksoni. However, more recent phylogenetic analyses suggest it should be regarded as Dasyuromorphia incertae sedis because of its lack of craniodental synapomorphies uniting it with undoubted thylacinids (Churchill et al., 2023.1; Kealy & Beck, 2017; Rovinsky et al., 2019).

Two further medium-sized (1–10 kg) incertae sedis dasyuromorphians are known from Miocene deposits; Whollydooleya tomnpatrichorum Archer, Christmas et al., 2016.2, from Miocene deposits in New Riversleigh (an area approximately 10 km southwest of the Riversleigh World Heritage Area) and Apoktesis cuspis Campbell, 1976, from upper Oligocene deposits at Lake Ngapakaldi in the Tirari Desert of South Australia. Either may be related to thylacinids or dasyurids (Archer, Christmas et al., 2016.2; Campbell, 1976). However, the lack of adequate fossil material to critically assess the relationships of these two enigmatic taxa precludes a more precise assignment beyond Dasyuromorphia incertae sedis. Whollydooleya tomnpatrichorum is only known from a single lower molar while the location of the skull and dentaries attributed to A. cuspis is currently unknown.

In this study, we describe three new species of thylacinid from Riversleigh’s oldest deposits: the upper Oligocene Hiatus and White Hunter Sites. The fossil specimens herein are all dentaries retaining near complete or partial lower dentitions.
Of course, it would be stupid to assume the Bronze Age pastoralists who wrote the Bible knew anything about Australia, or even a southern hemisphere. Since they believe Earth was a small flat place with a dome over it, they wouldn't even have considered hemispheres, northern of southern. Their view of the world was so narrow and restricted they thought all they had to explain was the small area within a day or two's walk of the Canaanite Hills, so nothing outside that small area was included; not an animals, mountain, continent or people; nothing.

So, the idea that they would have believed the Tasmanian tiger was magically created without ancestors 10,000 years ago or less is utterly preposterous and could only be believed by someone at least as blind to the evidence as were the authors of Genesis.
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